Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13075

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
2,954,778	-		PFLU_RS13070	0.37	-1.0
2,954,814	-		PFLU_RS13070	0.40	-1.2
2,954,892	+		PFLU_RS13070	0.46	+0.5
2,954,990	+		PFLU_RS13070	0.53	+0.8
2,954,990	+		PFLU_RS13070	0.53	-1.5
2,954,990	+		PFLU_RS13070	0.53	-0.0
2,954,991	-		PFLU_RS13070	0.53	-0.6
2,954,991	-		PFLU_RS13070	0.53	-0.0
2,954,991	-		PFLU_RS13070	0.53	-1.8
2,954,994	+		PFLU_RS13070	0.53	-2.0
2,954,994	+		PFLU_RS13070	0.53	-0.0
2,954,994	+		PFLU_RS13070	0.53	+0.4
2,954,994	+		PFLU_RS13070	0.53	+0.8
2,954,994	+		PFLU_RS13070	0.53	+0.7
2,954,994	+		PFLU_RS13070	0.53	+1.4
2,954,994	+		PFLU_RS13070	0.53	+0.3
2,954,994	+		PFLU_RS13070	0.53	+0.4
2,954,994	+		PFLU_RS13070	0.53	+0.2
2,954,994	+		PFLU_RS13070	0.53	-1.2
2,954,994	+		PFLU_RS13070	0.53	+1.4
2,954,994	+		PFLU_RS13070	0.53	-0.3
2,954,994	+		PFLU_RS13070	0.53	+1.5
2,954,994	+		PFLU_RS13070	0.53	+0.6
2,954,994	+		PFLU_RS13070	0.53	-1.8
2,954,994	+		PFLU_RS13070	0.53	+0.6
2,954,994	+		PFLU_RS13070	0.53	-1.5
2,954,994	+		PFLU_RS13070	0.53	+3.4
2,954,995	-		PFLU_RS13070	0.53	+0.2
2,954,995	-		PFLU_RS13070	0.53	-0.3
2,954,995	-		PFLU_RS13070	0.53	-1.0
2,954,995	-		PFLU_RS13070	0.53	-0.0
2,954,995	-		PFLU_RS13070	0.53	-1.7
2,954,995	-		PFLU_RS13070	0.53	+1.0
2,954,995	-		PFLU_RS13070	0.53	-0.3
2,954,995	-		PFLU_RS13070	0.53	-1.8
2,954,995	-		PFLU_RS13070	0.53	+0.4
2,954,995	-		PFLU_RS13070	0.53	+0.6
2,954,995	-		PFLU_RS13070	0.53	-0.8
2,954,995	-		PFLU_RS13070	0.53	-0.8
2,954,995	-		PFLU_RS13070	0.53	+2.0
2,954,995	-		PFLU_RS13070	0.53	-1.6
2,954,995	-		PFLU_RS13070	0.53	-0.3
2,954,995	-		PFLU_RS13070	0.53	-0.0
2,954,995	-		PFLU_RS13070	0.53	-1.8
2,954,995	-		PFLU_RS13070	0.53	-1.3
2,954,995	-		PFLU_RS13070	0.53	+0.6
2,954,995	-		PFLU_RS13070	0.53	-1.0
2,954,995	-		PFLU_RS13070	0.53	-1.0
2,954,995	-		PFLU_RS13070	0.53	+0.4
2,954,995	-		PFLU_RS13070	0.53	-2.3
2,954,995	-		PFLU_RS13070	0.53	+0.2
2,954,995	-		PFLU_RS13070	0.53	+1.0
2,954,995	-		PFLU_RS13070	0.53	-2.5
2,954,995	-		PFLU_RS13070	0.53	+2.0
2,954,995	-		PFLU_RS13070	0.53	-2.5
2,955,108	-		PFLU_RS13070	0.62	-1.2
2,955,168	-		PFLU_RS13070	0.66	-1.0
2,955,168	-		PFLU_RS13070	0.66	-0.0
2,955,187	+		PFLU_RS13070	0.68	+2.0
2,955,187	+		PFLU_RS13070	0.68	-1.0
2,955,263	-		PFLU_RS13070	0.73	-1.7
2,955,542	+				-1.3
2,955,542	+				-1.3
2,955,543	-				+1.2
2,955,543	-				-0.6
2,955,546	+				+0.4
2,955,546	+				-0.0
2,955,547	-				-0.7
2,955,547	-				+1.1
2,955,547	-				-0.2
2,955,547	-				+0.2
2,955,556	-				-2.1
2,955,577	-				+0.7
2,955,577	-				-1.0
2,955,577	-				+0.4
2,955,632	+				+1.7
2,955,632	+				-1.3
2,955,633	-				-1.9
2,955,633	-				+1.6
2,955,849	+		PFLU_RS13075	0.47	+0.4
2,955,849	+		PFLU_RS13075	0.47	-3.2
2,955,849	+		PFLU_RS13075	0.47	-0.3
2,955,850	-		PFLU_RS13075	0.47	+1.6
2,955,850	-		PFLU_RS13075	0.47	-0.8
2,955,850	-		PFLU_RS13075	0.47	+0.4
2,955,850	-		PFLU_RS13075	0.47	+1.0
2,955,850	-		PFLU_RS13075	0.47	-0.6
2,955,850	-		PFLU_RS13075	0.47	-0.6
2,955,875	+		PFLU_RS13075	0.52	+0.3
2,955,944	+		PFLU_RS13075	0.66	+2.8
2,955,945	-		PFLU_RS13075	0.66	+1.0
2,955,953	+		PFLU_RS13075	0.68	-2.5
2,955,953	+		PFLU_RS13075	0.68	-2.3
2,955,953	+		PFLU_RS13075	0.68	-1.8
2,955,953	+		PFLU_RS13075	0.68	+0.4
2,955,953	+		PFLU_RS13075	0.68	-1.5
2,955,953	+		PFLU_RS13075	0.68	+0.7
2,955,953	+		PFLU_RS13075	0.68	-0.6
2,955,953	+		PFLU_RS13075	0.68	-1.6
2,955,953	+		PFLU_RS13075	0.68	-0.6
2,955,953	+		PFLU_RS13075	0.68	-2.8
2,955,953	+		PFLU_RS13075	0.68	+1.0
2,955,953	+		PFLU_RS13075	0.68	-0.3
2,955,953	+		PFLU_RS13075	0.68	-0.8
2,955,953	+		PFLU_RS13075	0.68	+4.0
2,955,953	+		PFLU_RS13075	0.68	-1.0
2,955,953	+		PFLU_RS13075	0.68	-0.8
2,955,953	+		PFLU_RS13075	0.68	+1.0
2,955,953	+		PFLU_RS13075	0.68	+0.4
2,955,953	+		PFLU_RS13075	0.68	-1.2
2,955,953	+		PFLU_RS13075	0.68	-1.6
2,955,953	+		PFLU_RS13075	0.68	+1.0
2,955,953	+		PFLU_RS13075	0.68	-2.1
2,955,953	+		PFLU_RS13075	0.68	+1.7
2,955,953	+		PFLU_RS13075	0.68	-0.7
2,955,953	+		PFLU_RS13075	0.68	-1.1
2,955,953	+		PFLU_RS13075	0.68	-0.2
2,955,953	+		PFLU_RS13075	0.68	-0.6
2,955,953	+		PFLU_RS13075	0.68	+1.2
2,955,953	+		PFLU_RS13075	0.68	+2.6
2,955,953	+		PFLU_RS13075	0.68	+1.0
2,955,953	+		PFLU_RS13075	0.68	+0.7
2,955,954	-		PFLU_RS13075	0.68	-1.5
2,955,954	-		PFLU_RS13075	0.68	+1.0
2,955,954	-		PFLU_RS13075	0.68	-1.0
2,955,954	-		PFLU_RS13075	0.68	-1.3
2,955,954	-		PFLU_RS13075	0.68	-0.0
2,955,954	-		PFLU_RS13075	0.68	-2.2
2,955,954	-		PFLU_RS13075	0.68	+2.0
2,955,954	-		PFLU_RS13075	0.68	-0.3
2,955,954	-		PFLU_RS13075	0.68	+0.4
2,955,954	-		PFLU_RS13075	0.68	-1.6
2,955,954	-		PFLU_RS13075	0.68	-0.0
2,955,954	-		PFLU_RS13075	0.68	+1.0
2,955,954	-		PFLU_RS13075	0.68	-1.8
2,955,954	-		PFLU_RS13075	0.68	-1.8
2,955,954	-		PFLU_RS13075	0.68	-0.6
2,955,954	-		PFLU_RS13075	0.68	-0.0
2,955,954	-		PFLU_RS13075	0.68	-1.0
2,955,954	-		PFLU_RS13075	0.68	-1.0
2,955,954	-		PFLU_RS13075	0.68	-1.3
2,955,954	-		PFLU_RS13075	0.68	-0.3
2,955,954	-		PFLU_RS13075	0.68	-0.2
2,955,954	-		PFLU_RS13075	0.68	+2.0
2,955,954	-		PFLU_RS13075	0.68	-0.0
2,955,954	-		PFLU_RS13075	0.68	+2.0
2,955,955	+		PFLU_RS13075	0.68	-2.0
2,955,955	+		PFLU_RS13075	0.68	+1.1
2,955,955	+		PFLU_RS13075	0.68	-2.9
2,955,955	+		PFLU_RS13075	0.68	+0.4
2,955,955	+		PFLU_RS13075	0.68	-2.1
2,955,955	+		PFLU_RS13075	0.68	+0.4
2,955,955	+		PFLU_RS13075	0.68	-1.8
2,955,955	+		PFLU_RS13075	0.68	-1.6
2,955,956	-		PFLU_RS13075	0.69	-0.6
2,955,956	-		PFLU_RS13075	0.69	-0.6
2,955,956	-		PFLU_RS13075	0.69	-0.3
2,955,983	+		PFLU_RS13075	0.74	+1.1
2,955,983	+		PFLU_RS13075	0.74	-0.8
2,955,984	-		PFLU_RS13075	0.74	+1.7
2,955,989	+		PFLU_RS13075	0.75	-1.7
2,955,989	+		PFLU_RS13075	0.75	+0.4
2,955,989	+		PFLU_RS13075	0.75	-0.1
2,955,990	-		PFLU_RS13075	0.76	+1.7
2,955,990	-		PFLU_RS13075	0.76	-2.1
2,955,990	-		PFLU_RS13075	0.76	+0.7
2,955,992	+		PFLU_RS13075	0.76	+2.0
2,955,992	+		PFLU_RS13075	0.76	-1.3
2,955,993	-		PFLU_RS13075	0.76	+0.8
2,955,993	-		PFLU_RS13075	0.76	-1.0
2,955,993	-		PFLU_RS13075	0.76	-1.1
2,955,993	-		PFLU_RS13075	0.76	-0.0
2,956,079	+				+0.4
2,956,080	-				+1.0
2,956,080	-				+0.4
2,956,081	+				+0.8
2,956,092	-				+2.0
2,956,092	-				+0.4
2,956,113	+				+4.3
2,956,120	+				+1.5
2,956,120	+				-1.5
2,956,120	+				-0.7
2,956,121	-				-0.0
2,956,121	-				+2.0
2,956,121	-				-0.3
2,956,121	-				-0.6
2,956,138	+				+0.4
2,956,330	+		PFLU_RS13080	0.24	+0.4
2,956,330	+		PFLU_RS13080	0.24	+1.7
2,956,330	+		PFLU_RS13080	0.24	-0.3
2,956,346	+		PFLU_RS13080	0.26	-2.2
2,956,347	-		PFLU_RS13080	0.26	-1.0
2,956,426	+		PFLU_RS13080	0.34	-0.3
2,956,426	+		PFLU_RS13080	0.34	+1.2
2,956,426	+		PFLU_RS13080	0.34	-0.3
2,956,427	-		PFLU_RS13080	0.35	+1.9
2,956,427	-		PFLU_RS13080	0.35	-0.3
2,956,429	+		PFLU_RS13080	0.35	-1.6
2,956,429	+		PFLU_RS13080	0.35	-1.5
2,956,429	+		PFLU_RS13080	0.35	-1.0
2,956,430	-		PFLU_RS13080	0.35	+1.0
2,956,450	+		PFLU_RS13080	0.37	+0.4
2,956,451	-		PFLU_RS13080	0.37	+2.0
2,956,451	-		PFLU_RS13080	0.37	+2.0
2,956,451	-		PFLU_RS13080	0.37	+1.3
2,956,583	-		PFLU_RS13080	0.51	+1.0
2,956,583	-		PFLU_RS13080	0.51	-0.5
2,956,720	-		PFLU_RS13080	0.66	+2.0
2,956,800	+		PFLU_RS13080	0.75	-1.6
2,956,801	-		PFLU_RS13080	0.75	+1.0
2,956,801	-		PFLU_RS13080	0.75	+1.9
2,956,864	+		PFLU_RS13080	0.82	+0.4
2,956,865	-		PFLU_RS13080	0.82	+1.1
2,956,874	+		PFLU_RS13080	0.83	+1.7
2,956,874	+		PFLU_RS13080	0.83	+3.8
2,956,875	-		PFLU_RS13080	0.83	-1.8
2,956,875	-		PFLU_RS13080	0.83	-1.9
2,956,881	+		PFLU_RS13080	0.84	+1.0
2,956,881	+		PFLU_RS13080	0.84	+1.2
2,956,882	-		PFLU_RS13080	0.84	+0.3
2,956,882	-		PFLU_RS13080	0.84	-1.0
2,956,951	+				+1.8
2,956,951	+				-2.1
2,956,952	-				-1.2
2,956,952	-				-1.0
2,957,003	+				-0.4
2,957,003	+				+2.0
2,957,003	+				-0.1
2,957,003	+				-0.0
2,957,004	-				+2.0
2,957,004	-				+0.2
2,957,004	-				-1.2
2,957,055	-				-1.3