Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12945

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
2,922,029	+		PFLU_RS12940	0.11	+2.0
2,922,030	-		PFLU_RS12940	0.11	+0.4
2,922,158	+		PFLU_RS12940	0.25	-0.0
2,922,158	+		PFLU_RS12940	0.25	+0.4
2,922,158	+		PFLU_RS12940	0.25	+2.0
2,922,158	+		PFLU_RS12940	0.25	-0.6
2,922,159	-		PFLU_RS12940	0.25	+0.5
2,922,159	-		PFLU_RS12940	0.25	+0.6
2,922,159	-		PFLU_RS12940	0.25	+2.7
2,922,159	-		PFLU_RS12940	0.25	-1.9
2,922,167	-		PFLU_RS12940	0.26	-1.2
2,922,167	-		PFLU_RS12940	0.26	+3.0
2,922,290	+		PFLU_RS12940	0.40	+1.1
2,922,290	+		PFLU_RS12940	0.40	-0.3
2,922,290	+		PFLU_RS12940	0.40	-1.3
2,922,290	+		PFLU_RS12940	0.40	+0.3
2,922,290	+		PFLU_RS12940	0.40	+0.2
2,922,290	+		PFLU_RS12940	0.40	-0.1
2,922,291	-		PFLU_RS12940	0.40	-2.2
2,922,291	-		PFLU_RS12940	0.40	-1.9
2,922,291	-		PFLU_RS12940	0.40	+1.6
2,922,400	+		PFLU_RS12940	0.52	+0.4
2,922,400	+		PFLU_RS12940	0.52	+0.4
2,922,400	+		PFLU_RS12940	0.52	+1.0
2,922,400	+		PFLU_RS12940	0.52	-0.5
2,922,401	-		PFLU_RS12940	0.52	-2.0
2,922,401	-		PFLU_RS12940	0.52	-0.0
2,922,401	-		PFLU_RS12940	0.52	-1.2
2,922,401	-		PFLU_RS12940	0.52	-1.3
2,922,614	+		PFLU_RS12940	0.76	+0.2
2,922,614	+		PFLU_RS12940	0.76	+1.0
2,922,614	+		PFLU_RS12940	0.76	-0.1
2,922,614	+		PFLU_RS12940	0.76	+0.0
2,922,614	+		PFLU_RS12940	0.76	-1.0
2,922,614	+		PFLU_RS12940	0.76	-1.4
2,922,614	+		PFLU_RS12940	0.76	+0.4
2,922,615	-		PFLU_RS12940	0.76	-0.3
2,922,615	-		PFLU_RS12940	0.76	-0.6
2,922,615	-		PFLU_RS12940	0.76	-0.8
2,922,693	+		PFLU_RS12940	0.85	-0.3
2,922,693	+		PFLU_RS12940	0.85	+0.7
2,922,693	+		PFLU_RS12940	0.85	+0.0
2,922,694	-		PFLU_RS12940	0.85	-0.6
2,922,814	-				+2.0
2,922,814	-				-0.5
2,922,820	+				-1.0
2,922,820	+				-0.2
2,922,820	+				-0.8
2,922,820	+				+2.0
2,922,821	-				+2.0
2,922,821	-				-1.1
2,922,839	+				-1.7
2,922,839	+				-1.0
2,922,839	+				-0.6
2,922,839	+				-1.8
2,922,839	+				-0.0
2,922,840	-				+0.9
2,922,840	-				-0.5
2,922,840	-				+2.8
2,922,840	-				-1.0
2,922,840	-				+1.1
2,922,840	-				+1.4
2,922,864	+				-1.7
2,922,864	+				-1.5
2,922,864	+				+0.4
2,922,864	+				+0.2
2,922,864	+				+1.6
2,922,864	+				+1.0
2,922,864	+				-1.2
2,922,864	+				-0.3
2,922,864	+				-1.2
2,922,864	+				+0.4
2,922,864	+				-1.9
2,922,865	-				+1.7
2,922,865	-				-0.3
2,922,865	-				-1.5
2,922,865	-				-1.0
2,922,865	-				+1.1
2,922,865	-				+1.2
2,922,865	-				+1.2
2,922,865	-				-0.7
2,922,865	-				-0.6
2,922,911	+				-0.8
2,922,945	+				+2.0
2,923,013	+		PFLU_RS12945	0.22	-2.9
2,923,013	+		PFLU_RS12945	0.22	-1.6
2,923,013	+		PFLU_RS12945	0.22	+1.0
2,923,013	+		PFLU_RS12945	0.22	-2.0
2,923,013	+		PFLU_RS12945	0.22	-1.2
2,923,014	-		PFLU_RS12945	0.22	-0.8
2,923,014	-		PFLU_RS12945	0.22	-2.4
2,923,014	-		PFLU_RS12945	0.22	-1.7
2,923,014	-		PFLU_RS12945	0.22	-1.6
2,923,329	+				+2.4
2,923,342	+				-0.8
2,923,343	-				+0.4
2,923,343	-				-1.0
2,923,343	-				+3.0
2,923,450	+		PFLU_RS12950	0.46	-2.4
2,923,450	+		PFLU_RS12950	0.46	+0.8
2,923,450	+		PFLU_RS12950	0.46	+1.2
2,923,451	-		PFLU_RS12950	0.46	+1.0
2,923,451	-		PFLU_RS12950	0.46	+2.5
2,923,451	-		PFLU_RS12950	0.46	-0.3
2,923,451	-		PFLU_RS12950	0.46	-0.3
2,923,451	-		PFLU_RS12950	0.46	-0.1
2,923,460	+		PFLU_RS12950	0.50	-0.3
2,923,460	+		PFLU_RS12950	0.50	-1.6
2,923,460	+		PFLU_RS12950	0.50	+0.8
2,923,460	+		PFLU_RS12950	0.50	+1.4
2,923,460	+		PFLU_RS12950	0.50	+3.0
2,923,460	+		PFLU_RS12950	0.50	+0.4
2,923,460	+		PFLU_RS12950	0.50	+1.0
2,923,460	+		PFLU_RS12950	0.50	-1.8
2,923,460	+		PFLU_RS12950	0.50	+0.4
2,923,461	-		PFLU_RS12950	0.51	-0.0
2,923,461	-		PFLU_RS12950	0.51	-1.5
2,923,461	-		PFLU_RS12950	0.51	-1.5
2,923,522	+		PFLU_RS12950	0.76	-1.9
2,923,522	+		PFLU_RS12950	0.76	-2.1
2,923,523	-		PFLU_RS12950	0.77	+1.1
2,923,523	-		PFLU_RS12950	0.77	-0.2
2,923,523	-		PFLU_RS12950	0.77	-3.2
2,923,523	-		PFLU_RS12950	0.77	+2.0
2,923,523	-		PFLU_RS12950	0.77	+2.0
2,923,523	-		PFLU_RS12950	0.77	-1.8
2,923,563	+				+0.4
2,923,563	+				+0.1
2,923,563	+				-1.2
2,923,563	+				-2.7
2,923,564	-				+2.0
2,923,564	-				-1.8
2,923,564	-				-1.2
2,923,566	+				+0.6
2,923,566	+				+1.0
2,923,566	+				-0.2
2,923,567	-				+1.8
2,923,567	-				+0.5
2,923,567	-				+0.7
2,923,567	-				+1.1
2,923,567	-				-0.2
2,923,567	-				-1.0
2,923,583	+				+2.4
2,923,583	+				-1.3
2,923,583	+				+0.7
2,923,584	-				-0.9
2,923,598	+				-0.0
2,923,599	-				-1.8
2,923,621	+				+0.4
2,923,621	+				+2.0
2,923,621	+				+1.6
2,923,622	-				+0.1
2,923,622	-				-0.0
2,923,642	-				+1.3
2,923,642	-				-1.6
2,923,642	-				-2.2
2,923,646	+				+0.4
2,923,646	+				+1.2
2,923,646	+				+2.3
2,923,646	+				-0.3
2,923,647	-				+2.0
2,923,647	-				-2.5
2,923,647	-				+0.1
2,923,647	-				-2.6
2,923,647	-				+1.1
2,923,647	-				-2.2
2,923,647	-				-1.3
2,923,647	-				+2.0
2,923,651	-				-0.8
2,923,651	-				+2.4
2,923,664	-				+0.8
2,923,664	-				+2.2
2,923,675	-				-0.0
2,923,675	-				+0.4
2,923,693	+				+0.8
2,923,693	+				+2.6
2,923,693	+				-2.0
2,923,693	+				+0.4
2,923,693	+				-2.2
2,923,693	+				-1.8
2,923,693	+				+1.6
2,923,693	+				-2.1
2,923,693	+				+2.0
2,923,693	+				-0.0
2,923,693	+				+1.0
2,923,693	+				+0.3
2,923,693	+				-0.0
2,923,693	+				-2.1
2,923,693	+				-1.2
2,923,693	+				+1.0
2,923,693	+				-1.3
2,923,694	-				-2.6
2,923,694	-				-1.3
2,923,694	-				+1.6
2,923,694	-				+3.8
2,923,694	-				-0.0
2,923,694	-				-0.0
2,923,694	-				+2.6
2,923,694	-				+1.1
2,923,694	-				-2.3
2,923,694	-				-1.3
2,923,728	+				+0.2
2,923,764	+				-1.0
2,923,764	+				+1.3
2,923,764	+				-0.2
2,923,764	+				-0.0
2,923,764	+				-0.2
2,923,764	+				+1.7
2,923,764	+				+1.0
2,923,764	+				-0.8
2,923,764	+				-1.0
2,923,764	+				-0.8
2,923,765	-				+0.4
2,923,765	-				+2.8
2,923,765	-				+0.1
2,923,765	-				-1.1
2,923,765	-				+0.4
2,923,765	-				+1.0
2,923,765	-				-1.0
2,923,765	-				+0.2
2,923,766	+				+0.4
2,923,766	+				-1.1
2,923,766	+				-0.2
2,923,766	+				+2.1
2,923,766	+				-2.1
2,923,766	+				-0.5
2,923,766	+				-0.0
2,923,767	-				+1.0
2,923,767	-				+1.0
2,923,767	-				-0.2
2,923,770	+				-0.0
2,923,770	+				+1.0
2,923,770	+				+1.2
2,923,770	+				+0.8
2,923,770	+				-0.0
2,923,770	+				-0.8
2,923,770	+				+1.2
2,923,770	+				+0.8
2,923,770	+				+1.2
2,923,770	+				-0.0
2,923,770	+				+2.1
2,923,770	+				+1.4
2,923,770	+				-2.3
2,923,770	+				-0.0
2,923,770	+				+0.5
2,923,771	-				-1.2
2,923,771	-				+3.1
2,923,771	-				-0.5
2,923,771	-				-0.0
2,923,771	-				+1.0
2,923,771	-				+0.1
2,923,817	+				-1.3
2,923,817	+				+0.5
2,923,817	+				-0.7
2,923,817	+				-0.0
2,923,818	-				-2.7
2,923,818	-				+0.4
2,923,946	+		PFLU_RS12955	0.25	-0.8
2,923,946	+		PFLU_RS12955	0.25	+0.2
2,923,946	+		PFLU_RS12955	0.25	-0.6
2,923,947	-		PFLU_RS12955	0.25	-0.3
2,923,947	-		PFLU_RS12955	0.25	+0.4
2,923,985	+		PFLU_RS12955	0.32	-0.0
2,923,985	+		PFLU_RS12955	0.32	+0.4
2,923,985	+		PFLU_RS12955	0.32	-1.8
2,923,985	+		PFLU_RS12955	0.32	-2.0
2,923,985	+		PFLU_RS12955	0.32	+1.0
2,923,985	+		PFLU_RS12955	0.32	+0.6
2,923,986	-		PFLU_RS12955	0.32	-1.2
2,923,986	-		PFLU_RS12955	0.32	+0.1
2,923,986	-		PFLU_RS12955	0.32	+1.5
2,923,986	-		PFLU_RS12955	0.32	-1.0
2,923,990	+		PFLU_RS12955	0.33	+2.0
2,923,990	+		PFLU_RS12955	0.33	-1.3
2,923,990	+		PFLU_RS12955	0.33	-0.1
2,923,990	+		PFLU_RS12955	0.33	+1.0
2,923,990	+		PFLU_RS12955	0.33	-1.3
2,923,990	+		PFLU_RS12955	0.33	-0.0
2,923,990	+		PFLU_RS12955	0.33	+1.0
2,923,991	-		PFLU_RS12955	0.33	+0.4
2,923,991	-		PFLU_RS12955	0.33	-1.0
2,923,991	-		PFLU_RS12955	0.33	-0.6
2,924,045	+		PFLU_RS12955	0.43	-0.3
2,924,046	-		PFLU_RS12955	0.43	-0.3
2,924,046	-		PFLU_RS12955	0.43	+0.5
2,924,088	+		PFLU_RS12955	0.51	-0.4
2,924,089	-		PFLU_RS12955	0.51	-1.8
2,924,089	-		PFLU_RS12955	0.51	-0.3
2,924,089	-		PFLU_RS12955	0.51	-1.3
2,924,089	-		PFLU_RS12955	0.51	-1.2
2,924,243	+		PFLU_RS12955	0.78	-0.6
2,924,243	+		PFLU_RS12955	0.78	-0.3
2,924,265	+		PFLU_RS12955	0.82	+2.3
2,924,265	+		PFLU_RS12955	0.82	+0.5
2,924,266	-		PFLU_RS12955	0.83	-0.3
2,924,266	-		PFLU_RS12955	0.83	+0.6