Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08055

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
1,794,511	+		PFLU_RS08050	0.70	-2.3
1,794,511	+		PFLU_RS08050	0.70	-0.8
1,794,511	+		PFLU_RS08050	0.70	+0.2
1,794,511	+		PFLU_RS08050	0.70	-1.1
1,794,511	+		PFLU_RS08050	0.70	+0.7
1,794,511	+		PFLU_RS08050	0.70	+0.9
1,794,511	+		PFLU_RS08050	0.70	+0.9
1,794,511	+		PFLU_RS08050	0.70	-3.3
1,794,511	+		PFLU_RS08050	0.70	-1.5
1,794,511	+		PFLU_RS08050	0.70	+0.9
1,794,511	+		PFLU_RS08050	0.70	+1.0
1,794,512	-		PFLU_RS08050	0.70	-0.3
1,794,512	-		PFLU_RS08050	0.70	-0.1
1,794,512	-		PFLU_RS08050	0.70	-3.0
1,794,512	-		PFLU_RS08050	0.70	-1.8
1,794,555	+		PFLU_RS08050	0.75	-0.7
1,794,555	+		PFLU_RS08050	0.75	-0.9
1,794,555	+		PFLU_RS08050	0.75	-0.6
1,794,556	-		PFLU_RS08050	0.75	-1.2
1,794,556	-		PFLU_RS08050	0.75	-0.0
1,794,556	-		PFLU_RS08050	0.75	-1.0
1,794,556	-		PFLU_RS08050	0.75	-0.3
1,794,574	+		PFLU_RS08050	0.77	+0.6
1,794,574	+		PFLU_RS08050	0.77	-2.1
1,794,626	+		PFLU_RS08050	0.82	+1.3
1,794,630	+		PFLU_RS08050	0.83	+0.1
1,794,630	+		PFLU_RS08050	0.83	-0.6
1,794,631	-		PFLU_RS08050	0.83	-1.7
1,794,631	-		PFLU_RS08050	0.83	+1.7
1,794,631	-		PFLU_RS08050	0.83	-1.3
1,794,631	-		PFLU_RS08050	0.83	-0.8
1,794,631	-		PFLU_RS08050	0.83	+0.1
1,794,766	+				+3.3
1,794,766	+				-0.9
1,794,796	+				-1.5
1,794,814	+				-1.3
1,794,814	+				-2.2
1,794,814	+				+2.6
1,794,830	+				+1.0
1,794,830	+				-1.9
1,794,831	-				+2.3
1,794,831	-				+1.4
1,794,831	-				-0.3
1,794,916	+				-0.0
1,794,916	+				+1.6
1,794,916	+				+0.5
1,794,916	+				-2.1
1,794,916	+				-0.3
1,794,916	+				-0.9
1,794,916	+				-0.3
1,794,916	+				+0.8
1,794,916	+				-0.5
1,794,916	+				-0.9
1,794,916	+				-2.2
1,794,916	+				+0.6
1,794,916	+				+0.3
1,794,916	+				+2.2
1,794,916	+				+2.0
1,794,916	+				-2.0
1,794,916	+				-0.7
1,794,917	-				+0.3
1,794,917	-				+0.9
1,794,917	-				-1.9
1,794,917	-				+2.3
1,794,917	-				-0.0
1,794,917	-				-0.5
1,794,917	-				+1.3
1,794,917	-				-2.0
1,794,917	-				-1.7
1,794,917	-				-1.7
1,794,917	-				+0.2
1,794,917	-				-0.0
1,795,005	+		PFLU_RS08055	0.11	-0.5
1,795,005	+		PFLU_RS08055	0.11	+0.3
1,795,006	-		PFLU_RS08055	0.12	+0.5
1,795,006	-		PFLU_RS08055	0.12	-0.2
1,795,095	+		PFLU_RS08055	0.17	+0.8
1,795,095	+		PFLU_RS08055	0.17	-0.9
1,795,095	+		PFLU_RS08055	0.17	+0.1
1,795,095	+		PFLU_RS08055	0.17	-1.1
1,795,095	+		PFLU_RS08055	0.17	-1.9
1,795,095	+		PFLU_RS08055	0.17	-0.7
1,795,095	+		PFLU_RS08055	0.17	-0.2
1,795,096	-		PFLU_RS08055	0.17	+0.9
1,795,096	-		PFLU_RS08055	0.17	+1.2
1,795,096	-		PFLU_RS08055	0.17	+0.2
1,795,096	-		PFLU_RS08055	0.17	+1.1
1,795,096	-		PFLU_RS08055	0.17	+1.7
1,795,096	-		PFLU_RS08055	0.17	-1.4
1,795,096	-		PFLU_RS08055	0.17	+2.3
1,795,096	-		PFLU_RS08055	0.17	+2.6
1,795,168	+		PFLU_RS08055	0.22	-0.1
1,795,168	+		PFLU_RS08055	0.22	+0.3
1,795,168	+		PFLU_RS08055	0.22	+1.9
1,795,168	+		PFLU_RS08055	0.22	-1.8
1,795,169	-		PFLU_RS08055	0.22	-0.3
1,795,169	-		PFLU_RS08055	0.22	-0.3
1,795,176	-		PFLU_RS08055	0.23	+0.5
1,795,362	+		PFLU_RS08055	0.35	-0.6
1,795,562	-		PFLU_RS08055	0.48	-3.0
1,795,740	+		PFLU_RS08055	0.60	+2.9
1,795,740	+		PFLU_RS08055	0.60	-2.5
1,795,740	+		PFLU_RS08055	0.60	+1.2
1,795,740	+		PFLU_RS08055	0.60	+1.2
1,795,740	+		PFLU_RS08055	0.60	-1.5
1,795,741	-		PFLU_RS08055	0.60	+1.0
1,795,741	-		PFLU_RS08055	0.60	-1.0
1,795,741	-		PFLU_RS08055	0.60	-1.1
1,795,741	-		PFLU_RS08055	0.60	-1.7
1,795,741	-		PFLU_RS08055	0.60	+1.3
1,795,741	-		PFLU_RS08055	0.60	+0.5
1,795,741	-		PFLU_RS08055	0.60	+0.9
1,795,741	-		PFLU_RS08055	0.60	+0.1
1,795,741	-		PFLU_RS08055	0.60	-1.8
1,795,761	+		PFLU_RS08055	0.61	-0.0
1,795,761	+		PFLU_RS08055	0.61	-0.8
1,795,761	+		PFLU_RS08055	0.61	+0.7
1,795,762	-		PFLU_RS08055	0.61	+1.5
1,795,762	-		PFLU_RS08055	0.61	-0.7
1,795,762	-		PFLU_RS08055	0.61	-0.3
1,795,762	-		PFLU_RS08055	0.61	+1.0
1,795,762	-		PFLU_RS08055	0.61	-1.9
1,795,767	+		PFLU_RS08055	0.62	-0.3
1,795,767	+		PFLU_RS08055	0.62	-1.3
1,795,767	+		PFLU_RS08055	0.62	+3.1
1,795,767	+		PFLU_RS08055	0.62	-0.9
1,795,767	+		PFLU_RS08055	0.62	+0.5
1,795,767	+		PFLU_RS08055	0.62	-2.2
1,795,767	+		PFLU_RS08055	0.62	-2.0
1,795,767	+		PFLU_RS08055	0.62	-0.9
1,795,768	-		PFLU_RS08055	0.62	-0.1
1,795,768	-		PFLU_RS08055	0.62	+1.4
1,795,768	-		PFLU_RS08055	0.62	-0.7
1,795,768	-		PFLU_RS08055	0.62	-1.3
1,795,768	-		PFLU_RS08055	0.62	-1.3
1,795,768	-		PFLU_RS08055	0.62	-0.2
1,795,788	+		PFLU_RS08055	0.63	+0.4
1,795,788	+		PFLU_RS08055	0.63	-0.5
1,795,789	-		PFLU_RS08055	0.63	+1.0
1,795,789	-		PFLU_RS08055	0.63	+0.4
1,795,789	-		PFLU_RS08055	0.63	+1.3
1,795,789	-		PFLU_RS08055	0.63	-0.7
1,795,795	-		PFLU_RS08055	0.64	-1.9
1,795,795	-		PFLU_RS08055	0.64	+0.9
1,795,795	-		PFLU_RS08055	0.64	-1.5
1,795,818	+		PFLU_RS08055	0.65	-0.3
1,795,881	+		PFLU_RS08055	0.69	+0.7
1,795,881	+		PFLU_RS08055	0.69	+1.6
1,795,881	+		PFLU_RS08055	0.69	+1.3
1,795,881	+		PFLU_RS08055	0.69	-1.1
1,795,881	+		PFLU_RS08055	0.69	+0.7
1,795,881	+		PFLU_RS08055	0.69	-0.9
1,795,881	+		PFLU_RS08055	0.69	-0.5
1,795,881	+		PFLU_RS08055	0.69	-2.8
1,795,881	+		PFLU_RS08055	0.69	+0.4
1,795,881	+		PFLU_RS08055	0.69	-0.1
1,795,882	-		PFLU_RS08055	0.69	-1.1
1,795,882	-		PFLU_RS08055	0.69	-2.9
1,795,882	-		PFLU_RS08055	0.69	-1.9
1,795,882	-		PFLU_RS08055	0.69	-1.1
1,795,882	-		PFLU_RS08055	0.69	-0.5
1,795,882	-		PFLU_RS08055	0.69	+0.1
1,795,882	-		PFLU_RS08055	0.69	+0.9
1,795,882	-		PFLU_RS08055	0.69	+0.3
1,795,882	-		PFLU_RS08055	0.69	-2.3
1,795,882	-		PFLU_RS08055	0.69	-1.7
1,795,882	-		PFLU_RS08055	0.69	+2.0
1,795,882	-		PFLU_RS08055	0.69	-0.5
1,795,882	-		PFLU_RS08055	0.69	-1.1
1,796,019	+		PFLU_RS08055	0.78	-1.5
1,796,019	+		PFLU_RS08055	0.78	-2.3
1,796,020	-		PFLU_RS08055	0.78	+0.3
1,796,024	+		PFLU_RS08055	0.79	+0.2
1,796,024	+		PFLU_RS08055	0.79	+1.7
1,796,024	+		PFLU_RS08055	0.79	-2.2
1,796,024	+		PFLU_RS08055	0.79	-1.7
1,796,024	+		PFLU_RS08055	0.79	-1.0
1,796,024	+		PFLU_RS08055	0.79	+0.4
1,796,025	-		PFLU_RS08055	0.79	-0.0
1,796,037	+		PFLU_RS08055	0.80	+0.0
1,796,037	+		PFLU_RS08055	0.80	+0.3
1,796,037	+		PFLU_RS08055	0.80	+0.5
1,796,037	+		PFLU_RS08055	0.80	+0.7
1,796,037	+		PFLU_RS08055	0.80	-0.3
1,796,037	+		PFLU_RS08055	0.80	+0.3
1,796,037	+		PFLU_RS08055	0.80	+0.4
1,796,037	+		PFLU_RS08055	0.80	+0.3
1,796,037	+		PFLU_RS08055	0.80	+0.7
1,796,037	+		PFLU_RS08055	0.80	-0.6
1,796,037	+		PFLU_RS08055	0.80	-1.7
1,796,038	-		PFLU_RS08055	0.80	-0.1
1,796,038	-		PFLU_RS08055	0.80	+0.1
1,796,038	-		PFLU_RS08055	0.80	+0.2
1,796,038	-		PFLU_RS08055	0.80	+0.7
1,796,038	-		PFLU_RS08055	0.80	-1.8
1,796,038	-		PFLU_RS08055	0.80	-1.9
1,796,038	-		PFLU_RS08055	0.80	+0.5
1,796,038	-		PFLU_RS08055	0.80	-0.8
1,796,038	-		PFLU_RS08055	0.80	-0.6
1,796,038	-		PFLU_RS08055	0.80	-0.2
1,796,038	-		PFLU_RS08055	0.80	+3.3
1,796,038	-		PFLU_RS08055	0.80	+0.1
1,796,038	-		PFLU_RS08055	0.80	-0.2
1,796,038	-		PFLU_RS08055	0.80	-1.8
1,796,109	+		PFLU_RS08055	0.84	-0.3
1,796,109	+		PFLU_RS08055	0.84	-1.0
1,796,109	+		PFLU_RS08055	0.84	-0.2
1,796,109	+		PFLU_RS08055	0.84	+0.3
1,796,109	+		PFLU_RS08055	0.84	-0.4
1,796,109	+		PFLU_RS08055	0.84	+1.4
1,796,109	+		PFLU_RS08055	0.84	+0.2
1,796,109	+		PFLU_RS08055	0.84	+0.8
1,796,109	+		PFLU_RS08055	0.84	+0.2
1,796,109	+		PFLU_RS08055	0.84	+1.5
1,796,109	+		PFLU_RS08055	0.84	+0.8
1,796,109	+		PFLU_RS08055	0.84	+0.9
1,796,109	+		PFLU_RS08055	0.84	+0.0
1,796,109	+		PFLU_RS08055	0.84	-0.2
1,796,109	+		PFLU_RS08055	0.84	+0.1
1,796,109	+		PFLU_RS08055	0.84	-1.6
1,796,110	-		PFLU_RS08055	0.84	-1.5
1,796,110	-		PFLU_RS08055	0.84	-0.9
1,796,110	-		PFLU_RS08055	0.84	-1.4
1,796,110	-		PFLU_RS08055	0.84	+0.2
1,796,110	-		PFLU_RS08055	0.84	-0.0
1,796,110	-		PFLU_RS08055	0.84	-1.3
1,796,110	-		PFLU_RS08055	0.84	+1.3
1,796,110	-		PFLU_RS08055	0.84	+0.1
1,796,110	-		PFLU_RS08055	0.84	-1.9
1,796,110	-		PFLU_RS08055	0.84	+0.7
1,796,110	-		PFLU_RS08055	0.84	+1.3
1,796,110	-		PFLU_RS08055	0.84	-0.4
1,796,110	-		PFLU_RS08055	0.84	-1.7
1,796,110	-		PFLU_RS08055	0.84	+0.7
1,796,110	-		PFLU_RS08055	0.84	+0.4
1,796,196	+				+1.7
1,796,196	+				+1.4
1,796,196	+				+0.6
1,796,196	+				-1.0
1,796,196	+				-0.0
1,796,196	+				-1.0
1,796,196	+				+0.1
1,796,196	+				-1.2
1,796,196	+				-1.4
1,796,196	+				+1.1
1,796,196	+				-2.0
1,796,196	+				+0.8
1,796,196	+				+0.4
1,796,196	+				+1.3
1,796,196	+				-0.5
1,796,197	-				-1.2
1,796,197	-				+1.4
1,796,197	-				+1.8
1,796,197	-				+1.9
1,796,197	-				-0.5
1,796,197	-				+1.9
1,796,197	-				-2.3
1,796,197	-				+1.7
1,796,197	-				-0.7
1,796,197	-				-1.4
1,796,197	-				-0.8
1,796,197	-				+1.3
1,796,197	-				-1.4
1,796,197	-				-1.5
1,796,197	-				-0.5
1,796,197	-				+0.7
1,796,197	-				-0.9
1,796,197	-				-1.0
1,796,197	-				+0.3
1,796,197	-				-1.5
1,796,197	-				+1.8
1,796,197	-				+1.2
1,796,247	+				-1.2
1,796,247	+				-1.2
1,796,247	+				+0.0
1,796,247	+				-1.6
1,796,247	+				+0.7
1,796,247	+				+0.1
1,796,247	+				-2.6
1,796,247	+				+0.4
1,796,247	+				-1.9
1,796,247	+				-2.8
1,796,248	-				-1.4
1,796,248	-				+2.6
1,796,248	-				+0.2
1,796,248	-				-0.7
1,796,248	-				+0.7
1,796,248	-				-1.4
1,796,248	-				+0.3
1,796,250	+				-1.8
1,796,250	+				-0.3
1,796,250	+				+1.3
1,796,250	+				+1.0
1,796,250	+				+1.8
1,796,250	+				-0.3
1,796,250	+				-0.3
1,796,251	-				+0.3
1,796,259	+				-0.5
1,796,259	+				+0.8
1,796,259	+				-2.4
1,796,259	+				-0.2
1,796,259	+				-0.9
1,796,259	+				-0.0
1,796,259	+				+0.9
1,796,259	+				+1.2
1,796,259	+				-0.2
1,796,259	+				-0.4
1,796,259	+				-0.6
1,796,260	-				+0.0
1,796,260	-				-1.0
1,796,260	-				+0.7
1,796,260	-				-1.4
1,796,260	-				-1.3
1,796,260	-				+0.3
1,796,260	-				-1.9
1,796,344	-				-1.3
1,796,344	-				-0.3
1,796,401	+				-1.7
1,796,401	+				+0.6
1,796,401	+				+1.4
1,796,401	+				+0.3
1,796,401	+				+1.1
1,796,401	+				+4.6
1,796,401	+				-1.9
1,796,401	+				-1.6
1,796,402	-				-2.4
1,796,402	-				-0.7
1,796,402	-				+1.2
1,796,403	+				-0.8
1,796,403	+				-0.9
1,796,403	+				-0.9
1,796,403	+				-2.2
1,796,403	+				+2.2
1,796,403	+				+3.8
1,796,403	+				-2.2
1,796,403	+				-0.3
1,796,403	+				+0.7
1,796,403	+				-0.7
1,796,403	+				-0.3
1,796,403	+				+1.9
1,796,403	+				+3.0
1,796,404	-				-2.3
1,796,404	-				-1.4
1,796,404	-				-0.6
1,796,404	-				-0.7
1,796,404	-				+5.3
1,796,404	-				+2.0
1,796,404	-				-1.3
1,796,404	-				+0.2
1,796,404	-				-0.0
1,796,404	-				-0.9
1,796,404	-				+0.2
1,796,404	-				-1.6
1,796,415	+				+1.4
1,796,415	+				+1.2
1,796,415	+				+1.0
1,796,415	+				-1.0
1,796,469	+				-0.7
1,796,469	+				+0.2
1,796,470	-				+1.3
1,796,470	-				-1.5
1,796,475	+				-0.0
1,796,475	+				+2.4
1,796,475	+				-0.3
1,796,475	+				-0.3
1,796,475	+				+0.0
1,796,475	+				-0.5
1,796,475	+				+2.6
1,796,475	+				+0.7
1,796,476	-				+0.8
1,796,476	-				-1.2
1,796,476	-				+1.8
1,796,476	-				+0.9
1,796,529	+		PFLU_RS08060	0.16	+0.6
1,796,585	+		PFLU_RS08060	0.23	-1.3
1,796,670	+		PFLU_RS08060	0.35	-0.2
1,796,671	-		PFLU_RS08060	0.35	-0.2
1,796,683	+		PFLU_RS08060	0.36	-0.3
1,796,916	+		PFLU_RS08060	0.68	-0.9
1,796,916	+		PFLU_RS08060	0.68	-1.4
1,796,916	+		PFLU_RS08060	0.68	+2.3
1,796,916	+		PFLU_RS08060	0.68	-0.7
1,796,916	+		PFLU_RS08060	0.68	-0.9
1,796,916	+		PFLU_RS08060	0.68	-0.9
1,796,916	+		PFLU_RS08060	0.68	-0.3
1,796,917	-		PFLU_RS08060	0.68	-3.2
1,796,917	-		PFLU_RS08060	0.68	-0.4
1,796,994	+		PFLU_RS08060	0.78	+0.4
1,796,994	+		PFLU_RS08060	0.78	-2.7
1,797,041	-		PFLU_RS08060	0.85	-1.2
1,797,145	-				+2.1
1,797,145	-				+0.7
1,797,145	-				+1.6
1,797,154	+				+0.3
1,797,154	+				-1.5
1,797,154	+				+0.2
1,797,154	+				+0.2
1,797,155	-				-1.3
1,797,155	-				-1.7
1,797,155	-				+0.5
1,797,155	-				+1.1
1,797,155	-				+0.7
1,797,155	-				-0.4
1,797,271	-		PFLU_RS30495	0.69	+1.5