Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS03025

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS03015 and PFLU_RS03020 are separated by 81 nucleotidesPFLU_RS03020 and PFLU_RS03025 overlap by 4 nucleotidesPFLU_RS03025 and PFLU_RS03030 are separated by 185 nucleotides PFLU_RS03015: PFLU_RS03015 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH, at 695,158 to 696,765 _RS03015 PFLU_RS03020: PFLU_RS03020 - DNA-binding transcriptional regulator Fis, at 696,847 to 697,167 _RS03020 PFLU_RS03025: PFLU_RS03025 - tRNA dihydrouridine synthase DusB, at 697,164 to 698,177 _RS03025 PFLU_RS03030: PFLU_RS03030 - DUF3426 domain-containing protein, at 698,363 to 699,595 _RS03030 Position (kb) 697 698 699Strain fitness (log2 ratio) -2 -1 0 1 2 3at 696.186 kb on - strand, within PFLU_RS03015at 696.815 kb on + strandat 696.848 kb on + strandat 696.848 kb on + strandat 696.848 kb on + strandat 696.848 kb on + strandat 696.849 kb on - strandat 696.849 kb on - strandat 696.849 kb on - strandat 696.849 kb on - strandat 697.207 kb on + strandat 697.208 kb on - strandat 697.208 kb on - strandat 697.208 kb on - strandat 697.208 kb on - strandat 697.208 kb on - strandat 697.341 kb on + strand, within PFLU_RS03025at 697.342 kb on - strand, within PFLU_RS03025at 697.342 kb on - strand, within PFLU_RS03025at 697.342 kb on - strand, within PFLU_RS03025at 697.360 kb on + strand, within PFLU_RS03025at 697.361 kb on - strand, within PFLU_RS03025at 697.361 kb on - strand, within PFLU_RS03025at 697.361 kb on - strand, within PFLU_RS03025at 697.397 kb on + strand, within PFLU_RS03025at 697.398 kb on - strand, within PFLU_RS03025at 697.398 kb on - strand, within PFLU_RS03025at 697.398 kb on - strand, within PFLU_RS03025at 697.398 kb on - strand, within PFLU_RS03025at 697.432 kb on - strand, within PFLU_RS03025at 697.432 kb on - strand, within PFLU_RS03025at 697.432 kb on - strand, within PFLU_RS03025at 697.621 kb on + strand, within PFLU_RS03025at 697.622 kb on - strand, within PFLU_RS03025at 697.640 kb on - strand, within PFLU_RS03025at 698.059 kb on - strand, within PFLU_RS03025at 698.062 kb on - strand, within PFLU_RS03025at 698.062 kb on - strand, within PFLU_RS03025at 698.062 kb on - strand, within PFLU_RS03025at 698.062 kb on - strand, within PFLU_RS03025at 698.062 kb on - strand, within PFLU_RS03025at 698.062 kb on - strand, within PFLU_RS03025at 698.062 kb on - strand, within PFLU_RS03025at 698.062 kb on - strand, within PFLU_RS03025at 698.153 kb on - strandat 698.153 kb on - strandat 698.153 kb on - strandat 698.153 kb on - strandat 698.167 kb on - strandat 698.178 kb on - strandat 698.178 kb on - strandat 698.178 kb on - strandat 698.178 kb on - strandat 698.178 kb on - strandat 698.178 kb on - strandat 698.178 kb on - strandat 698.208 kb on - strandat 698.208 kb on - strandat 698.208 kb on - strandat 698.255 kb on - strandat 698.285 kb on + strandat 698.285 kb on + strandat 698.286 kb on - strandat 698.293 kb on + strandat 698.323 kb on - strandat 698.323 kb on - strandat 698.329 kb on + strandat 698.329 kb on + strandat 698.330 kb on - strandat 698.330 kb on - strandat 698.330 kb on - strandat 698.391 kb on + strandat 698.391 kb on + strandat 698.391 kb on + strandat 698.391 kb on + strandat 698.392 kb on - strandat 698.392 kb on - strandat 698.392 kb on - strandat 698.392 kb on - strandat 698.405 kb on - strandat 698.405 kb on - strandat 698.434 kb on + strandat 698.435 kb on - strandat 698.435 kb on - strandat 698.435 kb on - strandat 698.435 kb on - strandat 698.435 kb on - strandat 698.435 kb on - strandat 698.486 kb on - strandat 698.490 kb on + strand, within PFLU_RS03030at 698.490 kb on + strand, within PFLU_RS03030at 698.491 kb on - strand, within PFLU_RS03030at 698.491 kb on - strand, within PFLU_RS03030at 698.590 kb on + strand, within PFLU_RS03030at 698.591 kb on - strand, within PFLU_RS03030at 698.591 kb on - strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.642 kb on + strand, within PFLU_RS03030at 698.642 kb on + strand, within PFLU_RS03030at 698.642 kb on + strand, within PFLU_RS03030at 698.643 kb on - strand, within PFLU_RS03030at 698.643 kb on - strand, within PFLU_RS03030at 698.695 kb on + strand, within PFLU_RS03030at 698.695 kb on + strand, within PFLU_RS03030at 698.695 kb on + strand, within PFLU_RS03030at 698.695 kb on + strand, within PFLU_RS03030at 698.696 kb on - strand, within PFLU_RS03030at 698.696 kb on - strand, within PFLU_RS03030at 698.770 kb on - strand, within PFLU_RS03030at 698.770 kb on - strand, within PFLU_RS03030at 698.778 kb on + strand, within PFLU_RS03030at 698.778 kb on + strand, within PFLU_RS03030at 698.778 kb on + strand, within PFLU_RS03030at 698.778 kb on + strand, within PFLU_RS03030at 698.779 kb on - strand, within PFLU_RS03030at 698.779 kb on - strand, within PFLU_RS03030at 698.779 kb on - strand, within PFLU_RS03030at 698.779 kb on - strand, within PFLU_RS03030at 698.779 kb on - strand, within PFLU_RS03030at 698.779 kb on - strand, within PFLU_RS03030

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
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696,186 - PFLU_RS03015 0.64 +1.5
696,815 + -0.1
696,848 + -1.5
696,848 + -1.1
696,848 + +1.1
696,848 + -2.7
696,849 - -0.7
696,849 - +1.3
696,849 - +0.6
696,849 - +0.1
697,207 + -0.9
697,208 - +1.1
697,208 - +0.5
697,208 - +1.9
697,208 - +0.7
697,208 - -0.2
697,341 + PFLU_RS03025 0.17 -1.5
697,342 - PFLU_RS03025 0.18 +2.8
697,342 - PFLU_RS03025 0.18 +3.0
697,342 - PFLU_RS03025 0.18 +1.1
697,360 + PFLU_RS03025 0.19 -1.6
697,361 - PFLU_RS03025 0.19 +1.5
697,361 - PFLU_RS03025 0.19 +0.9
697,361 - PFLU_RS03025 0.19 +1.0
697,397 + PFLU_RS03025 0.23 +0.9
697,398 - PFLU_RS03025 0.23 +1.1
697,398 - PFLU_RS03025 0.23 -1.9
697,398 - PFLU_RS03025 0.23 +1.5
697,398 - PFLU_RS03025 0.23 +2.6
697,432 - PFLU_RS03025 0.26 +1.2
697,432 - PFLU_RS03025 0.26 -0.1
697,432 - PFLU_RS03025 0.26 +3.1
697,621 + PFLU_RS03025 0.45 +1.5
697,622 - PFLU_RS03025 0.45 +1.8
697,640 - PFLU_RS03025 0.47 +1.9
698,059 - PFLU_RS03025 0.88 -1.2
698,062 - PFLU_RS03025 0.89 +1.6
698,062 - PFLU_RS03025 0.89 +2.5
698,062 - PFLU_RS03025 0.89 +1.5
698,062 - PFLU_RS03025 0.89 -1.7
698,062 - PFLU_RS03025 0.89 +1.9
698,062 - PFLU_RS03025 0.89 +2.1
698,062 - PFLU_RS03025 0.89 +2.0
698,062 - PFLU_RS03025 0.89 +3.0
698,153 - +1.6
698,153 - +0.0
698,153 - +2.2
698,153 - +2.5
698,167 - +1.4
698,178 - -1.0
698,178 - -1.2
698,178 - -1.9
698,178 - +1.0
698,178 - -1.5
698,178 - +1.2
698,178 - +0.9
698,208 - +1.7
698,208 - +0.5
698,208 - +0.1
698,255 - -0.1
698,285 + +0.2
698,285 + +1.1
698,286 - +2.3
698,293 + -2.1
698,323 - +0.9
698,323 - -1.1
698,329 + +0.6
698,329 + +1.9
698,330 - +0.1
698,330 - -0.9
698,330 - +0.8
698,391 + +0.2
698,391 + -0.4
698,391 + +0.8
698,391 + +0.8
698,392 - +0.5
698,392 - +2.5
698,392 - -0.1
698,392 - +1.8
698,405 - -2.2
698,405 - +1.1
698,434 + -2.1
698,435 - -0.3
698,435 - +1.3
698,435 - -0.0
698,435 - +1.8
698,435 - +2.5
698,435 - -1.9
698,486 - +0.5
698,490 + PFLU_RS03030 0.10 +1.0
698,490 + PFLU_RS03030 0.10 +0.7
698,491 - PFLU_RS03030 0.10 +2.3
698,491 - PFLU_RS03030 0.10 -0.2
698,590 + PFLU_RS03030 0.18 +1.0
698,591 - PFLU_RS03030 0.18 +0.6
698,591 - PFLU_RS03030 0.18 +1.0
698,592 + PFLU_RS03030 0.19 -2.5
698,592 + PFLU_RS03030 0.19 +1.3
698,592 + PFLU_RS03030 0.19 +0.3
698,592 + PFLU_RS03030 0.19 +0.8
698,592 + PFLU_RS03030 0.19 +2.5
698,592 + PFLU_RS03030 0.19 +0.6
698,592 + PFLU_RS03030 0.19 +2.2
698,592 + PFLU_RS03030 0.19 +1.2
698,592 + PFLU_RS03030 0.19 +2.8
698,592 + PFLU_RS03030 0.19 -0.6
698,592 + PFLU_RS03030 0.19 -0.5
698,592 + PFLU_RS03030 0.19 -0.4
698,592 + PFLU_RS03030 0.19 +1.5
698,592 + PFLU_RS03030 0.19 -0.6
698,592 + PFLU_RS03030 0.19 +1.2
698,592 + PFLU_RS03030 0.19 -0.4
698,592 + PFLU_RS03030 0.19 +0.5
698,592 + PFLU_RS03030 0.19 +1.2
698,592 + PFLU_RS03030 0.19 +0.9
698,593 - PFLU_RS03030 0.19 -0.5
698,593 - PFLU_RS03030 0.19 -1.1
698,593 - PFLU_RS03030 0.19 +0.1
698,593 - PFLU_RS03030 0.19 +2.0
698,593 - PFLU_RS03030 0.19 -0.9
698,593 - PFLU_RS03030 0.19 -0.8
698,593 - PFLU_RS03030 0.19 +0.6
698,593 - PFLU_RS03030 0.19 -2.0
698,593 - PFLU_RS03030 0.19 -1.5
698,593 - PFLU_RS03030 0.19 -1.9
698,593 - PFLU_RS03030 0.19 +1.5
698,593 - PFLU_RS03030 0.19 -1.2
698,593 - PFLU_RS03030 0.19 +0.2
698,593 - PFLU_RS03030 0.19 -1.7
698,593 - PFLU_RS03030 0.19 -0.7
698,593 - PFLU_RS03030 0.19 -0.9
698,593 - PFLU_RS03030 0.19 -0.7
698,593 - PFLU_RS03030 0.19 -0.5
698,593 - PFLU_RS03030 0.19 +1.8
698,642 + PFLU_RS03030 0.23 +1.1
698,642 + PFLU_RS03030 0.23 -1.8
698,642 + PFLU_RS03030 0.23 -2.4
698,643 - PFLU_RS03030 0.23 +0.7
698,643 - PFLU_RS03030 0.23 +2.0
698,695 + PFLU_RS03030 0.27 +0.8
698,695 + PFLU_RS03030 0.27 -1.1
698,695 + PFLU_RS03030 0.27 +1.5
698,695 + PFLU_RS03030 0.27 +0.2
698,696 - PFLU_RS03030 0.27 +0.1
698,696 - PFLU_RS03030 0.27 +1.4
698,770 - PFLU_RS03030 0.33 -0.1
698,770 - PFLU_RS03030 0.33 +1.0
698,778 + PFLU_RS03030 0.34 +0.1
698,778 + PFLU_RS03030 0.34 -0.6
698,778 + PFLU_RS03030 0.34 +2.9
698,778 + PFLU_RS03030 0.34 -0.6
698,779 - PFLU_RS03030 0.34 +2.2
698,779 - PFLU_RS03030 0.34 -1.8
698,779 - PFLU_RS03030 0.34 +0.5
698,779 - PFLU_RS03030 0.34 -1.2
698,779 - PFLU_RS03030 0.34 -2.0
698,779 - PFLU_RS03030 0.34 +3.3

Or see this region's nucleotide sequence