Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01140 and PFLU_RS01145 are separated by 256 nucleotides PFLU_RS01145 and PFLU_RS01150 overlap by 4 nucleotides
PFLU_RS01140: PFLU_RS01140 - AAA family ATPase, at 249,642 to 250,802
_RS01140
PFLU_RS01145: PFLU_RS01145 - efflux RND transporter periplasmic adaptor subunit, at 251,059 to 252,141
_RS01145
PFLU_RS01150: PFLU_RS01150 - efflux RND transporter periplasmic adaptor subunit, at 252,138 to 253,208
_RS01150
Position (kb) 251
252
253 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 250.210 kb on + strand, within PFLU_RS01140 at 250.210 kb on + strand, within PFLU_RS01140 at 250.211 kb on - strand, within PFLU_RS01140 at 250.211 kb on - strand, within PFLU_RS01140 at 250.297 kb on + strand, within PFLU_RS01140 at 250.297 kb on + strand, within PFLU_RS01140 at 250.297 kb on + strand, within PFLU_RS01140 at 250.297 kb on + strand, within PFLU_RS01140 at 250.297 kb on + strand, within PFLU_RS01140 at 250.297 kb on + strand, within PFLU_RS01140 at 250.297 kb on + strand, within PFLU_RS01140 at 250.297 kb on + strand, within PFLU_RS01140 at 250.298 kb on - strand, within PFLU_RS01140 at 250.298 kb on - strand, within PFLU_RS01140 at 250.298 kb on - strand, within PFLU_RS01140 at 250.298 kb on - strand, within PFLU_RS01140 at 250.298 kb on - strand, within PFLU_RS01140 at 250.298 kb on - strand, within PFLU_RS01140 at 250.298 kb on - strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.321 kb on - strand, within PFLU_RS01140 at 250.321 kb on - strand, within PFLU_RS01140 at 250.321 kb on - strand, within PFLU_RS01140 at 250.321 kb on - strand, within PFLU_RS01140 at 250.321 kb on - strand, within PFLU_RS01140 at 250.321 kb on - strand, within PFLU_RS01140 at 250.394 kb on - strand, within PFLU_RS01140 at 250.486 kb on + strand, within PFLU_RS01140 at 250.486 kb on + strand, within PFLU_RS01140 at 250.575 kb on - strand, within PFLU_RS01140 at 250.690 kb on + strand at 250.690 kb on + strand at 250.774 kb on + strand at 250.774 kb on + strand at 250.811 kb on + strand at 250.811 kb on + strand at 250.811 kb on + strand at 250.811 kb on + strand at 250.811 kb on + strand at 250.811 kb on + strand at 250.812 kb on - strand at 250.812 kb on - strand at 250.812 kb on - strand at 250.812 kb on - strand at 250.812 kb on - strand at 250.812 kb on - strand at 250.812 kb on - strand at 250.817 kb on + strand at 250.818 kb on - strand at 250.818 kb on - strand at 250.868 kb on + strand at 250.869 kb on - strand at 250.869 kb on - strand at 250.869 kb on - strand at 250.869 kb on - strand at 250.869 kb on - strand at 251.004 kb on + strand at 251.004 kb on + strand at 251.004 kb on + strand at 251.004 kb on + strand at 251.004 kb on + strand at 251.004 kb on + strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.020 kb on + strand at 251.020 kb on + strand at 251.021 kb on - strand at 251.071 kb on - strand at 251.082 kb on + strand at 251.082 kb on + strand at 251.082 kb on + strand at 251.082 kb on + strand at 251.082 kb on + strand at 251.082 kb on + strand at 251.082 kb on + strand at 251.082 kb on + strand at 251.082 kb on + strand at 251.082 kb on + strand at 251.083 kb on - strand at 251.083 kb on - strand at 251.083 kb on - strand at 251.083 kb on - strand at 251.083 kb on - strand at 251.099 kb on + strand at 251.449 kb on + strand, within PFLU_RS01145 at 251.450 kb on - strand, within PFLU_RS01145 at 251.450 kb on - strand, within PFLU_RS01145 at 251.450 kb on - strand, within PFLU_RS01145 at 251.450 kb on - strand, within PFLU_RS01145 at 251.467 kb on + strand, within PFLU_RS01145 at 251.557 kb on + strand, within PFLU_RS01145 at 251.557 kb on + strand, within PFLU_RS01145 at 251.557 kb on + strand, within PFLU_RS01145 at 251.558 kb on - strand, within PFLU_RS01145 at 251.559 kb on + strand, within PFLU_RS01145 at 251.559 kb on + strand, within PFLU_RS01145 at 251.559 kb on + strand, within PFLU_RS01145 at 251.560 kb on - strand, within PFLU_RS01145 at 251.560 kb on - strand, within PFLU_RS01145 at 251.689 kb on + strand, within PFLU_RS01145 at 251.689 kb on + strand, within PFLU_RS01145 at 251.689 kb on + strand, within PFLU_RS01145 at 251.689 kb on + strand, within PFLU_RS01145 at 251.689 kb on + strand, within PFLU_RS01145 at 251.689 kb on + strand, within PFLU_RS01145 at 251.689 kb on + strand, within PFLU_RS01145 at 251.690 kb on - strand, within PFLU_RS01145 at 251.690 kb on - strand, within PFLU_RS01145 at 251.690 kb on - strand, within PFLU_RS01145 at 251.690 kb on - strand, within PFLU_RS01145 at 251.690 kb on - strand, within PFLU_RS01145 at 251.690 kb on - strand, within PFLU_RS01145 at 251.777 kb on + strand, within PFLU_RS01145 at 252.016 kb on + strand, within PFLU_RS01145 at 252.157 kb on + strand at 252.157 kb on + strand at 252.157 kb on + strand at 252.158 kb on - strand at 252.158 kb on - strand at 252.158 kb on - strand at 252.158 kb on - strand at 252.158 kb on - strand at 252.158 kb on - strand at 252.158 kb on - strand at 252.175 kb on + strand at 252.176 kb on - strand at 252.176 kb on - strand at 252.305 kb on + strand, within PFLU_RS01150 at 252.305 kb on + strand, within PFLU_RS01150 at 252.306 kb on - strand, within PFLU_RS01150 at 252.462 kb on + strand, within PFLU_RS01150 at 252.462 kb on + strand, within PFLU_RS01150 at 252.462 kb on + strand, within PFLU_RS01150 at 252.462 kb on + strand, within PFLU_RS01150 at 252.462 kb on + strand, within PFLU_RS01150 at 252.462 kb on + strand, within PFLU_RS01150 at 252.462 kb on + strand, within PFLU_RS01150 at 252.462 kb on + strand, within PFLU_RS01150 at 252.463 kb on - strand, within PFLU_RS01150 at 252.463 kb on - strand, within PFLU_RS01150 at 252.463 kb on - strand, within PFLU_RS01150 at 252.463 kb on - strand, within PFLU_RS01150 at 252.463 kb on - strand, within PFLU_RS01150 at 252.463 kb on - strand, within PFLU_RS01150 at 252.463 kb on - strand, within PFLU_RS01150 at 252.463 kb on - strand, within PFLU_RS01150 at 252.463 kb on - strand, within PFLU_RS01150 at 252.463 kb on - strand, within PFLU_RS01150 at 252.463 kb on - strand, within PFLU_RS01150 at 252.463 kb on - strand, within PFLU_RS01150 at 252.624 kb on + strand, within PFLU_RS01150 at 252.624 kb on + strand, within PFLU_RS01150 at 252.624 kb on + strand, within PFLU_RS01150 at 252.625 kb on - strand, within PFLU_RS01150 at 252.625 kb on - strand, within PFLU_RS01150 at 252.625 kb on - strand, within PFLU_RS01150 at 252.625 kb on - strand, within PFLU_RS01150 at 253.025 kb on + strand, within PFLU_RS01150
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride remove 250,210 + PFLU_RS01140 0.49 +0.6 250,210 + PFLU_RS01140 0.49 +0.9 250,211 - PFLU_RS01140 0.49 -2.4 250,211 - PFLU_RS01140 0.49 -1.8 250,297 + PFLU_RS01140 0.56 -2.5 250,297 + PFLU_RS01140 0.56 -1.4 250,297 + PFLU_RS01140 0.56 +1.2 250,297 + PFLU_RS01140 0.56 -2.6 250,297 + PFLU_RS01140 0.56 -0.4 250,297 + PFLU_RS01140 0.56 -2.0 250,297 + PFLU_RS01140 0.56 +1.1 250,297 + PFLU_RS01140 0.56 +1.0 250,298 - PFLU_RS01140 0.57 +1.3 250,298 - PFLU_RS01140 0.57 +1.7 250,298 - PFLU_RS01140 0.57 -0.7 250,298 - PFLU_RS01140 0.57 +1.9 250,298 - PFLU_RS01140 0.57 +0.8 250,298 - PFLU_RS01140 0.57 +0.9 250,298 - PFLU_RS01140 0.57 +1.0 250,320 + PFLU_RS01140 0.58 +1.2 250,320 + PFLU_RS01140 0.58 -0.9 250,320 + PFLU_RS01140 0.58 +1.6 250,320 + PFLU_RS01140 0.58 -1.0 250,320 + PFLU_RS01140 0.58 -0.3 250,320 + PFLU_RS01140 0.58 -1.4 250,320 + PFLU_RS01140 0.58 -1.3 250,320 + PFLU_RS01140 0.58 -0.4 250,320 + PFLU_RS01140 0.58 +1.2 250,320 + PFLU_RS01140 0.58 +2.4 250,320 + PFLU_RS01140 0.58 -0.6 250,320 + PFLU_RS01140 0.58 -0.8 250,321 - PFLU_RS01140 0.58 -1.6 250,321 - PFLU_RS01140 0.58 -0.6 250,321 - PFLU_RS01140 0.58 +1.3 250,321 - PFLU_RS01140 0.58 -0.1 250,321 - PFLU_RS01140 0.58 +2.0 250,321 - PFLU_RS01140 0.58 +0.3 250,394 - PFLU_RS01140 0.65 +1.4 250,486 + PFLU_RS01140 0.73 +0.1 250,486 + PFLU_RS01140 0.73 +1.0 250,575 - PFLU_RS01140 0.80 -0.3 250,690 + -1.1 250,690 + -1.6 250,774 + -0.4 250,774 + +0.4 250,811 + -0.0 250,811 + +1.0 250,811 + -0.9 250,811 + -2.1 250,811 + -0.5 250,811 + -2.4 250,812 - -0.4 250,812 - +0.0 250,812 - +0.4 250,812 - -2.6 250,812 - +1.2 250,812 - -0.8 250,812 - -0.6 250,817 + +1.2 250,818 - +0.9 250,818 - +0.9 250,868 + +1.6 250,869 - +1.0 250,869 - -0.8 250,869 - -0.2 250,869 - -0.3 250,869 - +0.9 251,004 + +0.4 251,004 + +0.4 251,004 + -1.9 251,004 + +2.4 251,004 + -0.9 251,004 + -0.5 251,005 - +0.7 251,005 - +0.3 251,005 - -1.5 251,005 - +0.9 251,005 - -2.1 251,005 - +2.4 251,005 - -1.3 251,005 - -1.4 251,005 - +1.6 251,005 - +0.3 251,005 - -0.2 251,005 - +1.1 251,005 - -0.3 251,020 + +0.3 251,020 + +1.0 251,021 - -0.2 251,071 - +1.4 251,082 + +0.6 251,082 + -2.0 251,082 + -1.0 251,082 + +2.2 251,082 + -1.4 251,082 + -0.4 251,082 + +0.4 251,082 + -2.5 251,082 + -0.9 251,082 + -0.4 251,083 - -1.9 251,083 - -1.8 251,083 - -0.6 251,083 - +0.7 251,083 - -0.4 251,099 + +0.4 251,449 + PFLU_RS01145 0.36 +1.3 251,450 - PFLU_RS01145 0.36 +1.2 251,450 - PFLU_RS01145 0.36 +1.3 251,450 - PFLU_RS01145 0.36 +3.0 251,450 - PFLU_RS01145 0.36 -0.5 251,467 + PFLU_RS01145 0.38 +0.3 251,557 + PFLU_RS01145 0.46 +0.9 251,557 + PFLU_RS01145 0.46 +0.5 251,557 + PFLU_RS01145 0.46 +0.1 251,558 - PFLU_RS01145 0.46 -0.8 251,559 + PFLU_RS01145 0.46 +1.7 251,559 + PFLU_RS01145 0.46 +0.1 251,559 + PFLU_RS01145 0.46 -0.4 251,560 - PFLU_RS01145 0.46 +0.9 251,560 - PFLU_RS01145 0.46 -2.3 251,689 + PFLU_RS01145 0.58 -0.0 251,689 + PFLU_RS01145 0.58 +3.8 251,689 + PFLU_RS01145 0.58 -1.6 251,689 + PFLU_RS01145 0.58 +0.1 251,689 + PFLU_RS01145 0.58 -0.7 251,689 + PFLU_RS01145 0.58 +0.3 251,689 + PFLU_RS01145 0.58 -2.4 251,690 - PFLU_RS01145 0.58 -1.8 251,690 - PFLU_RS01145 0.58 +1.0 251,690 - PFLU_RS01145 0.58 -3.1 251,690 - PFLU_RS01145 0.58 -0.6 251,690 - PFLU_RS01145 0.58 +1.6 251,690 - PFLU_RS01145 0.58 +1.6 251,777 + PFLU_RS01145 0.66 +0.8 252,016 + PFLU_RS01145 0.88 +0.5 252,157 + +2.0 252,157 + -1.3 252,157 + -0.4 252,158 - -1.5 252,158 - -0.4 252,158 - -2.2 252,158 - -2.0 252,158 - -0.1 252,158 - -0.1 252,158 - +1.0 252,175 + +1.0 252,176 - -0.4 252,176 - +1.5 252,305 + PFLU_RS01150 0.16 +1.0 252,305 + PFLU_RS01150 0.16 -0.1 252,306 - PFLU_RS01150 0.16 -2.1 252,462 + PFLU_RS01150 0.30 -2.6 252,462 + PFLU_RS01150 0.30 -0.4 252,462 + PFLU_RS01150 0.30 -1.5 252,462 + PFLU_RS01150 0.30 +0.2 252,462 + PFLU_RS01150 0.30 -0.0 252,462 + PFLU_RS01150 0.30 +0.1 252,462 + PFLU_RS01150 0.30 -1.5 252,462 + PFLU_RS01150 0.30 -2.0 252,463 - PFLU_RS01150 0.30 -0.1 252,463 - PFLU_RS01150 0.30 -1.5 252,463 - PFLU_RS01150 0.30 +0.1 252,463 - PFLU_RS01150 0.30 +0.2 252,463 - PFLU_RS01150 0.30 +0.4 252,463 - PFLU_RS01150 0.30 -1.1 252,463 - PFLU_RS01150 0.30 -0.4 252,463 - PFLU_RS01150 0.30 -1.1 252,463 - PFLU_RS01150 0.30 -0.4 252,463 - PFLU_RS01150 0.30 -1.0 252,463 - PFLU_RS01150 0.30 +0.7 252,463 - PFLU_RS01150 0.30 -0.4 252,624 + PFLU_RS01150 0.45 -1.6 252,624 + PFLU_RS01150 0.45 -0.4 252,624 + PFLU_RS01150 0.45 -0.6 252,625 - PFLU_RS01150 0.45 +2.0 252,625 - PFLU_RS01150 0.45 +0.8 252,625 - PFLU_RS01150 0.45 +0.4 252,625 - PFLU_RS01150 0.45 -0.1 253,025 + PFLU_RS01150 0.83 -2.1
Or see this region's nucleotide sequence