Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22015

Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml
4,597,681	-		BWI76_RS22005	0.64	-0.4
4,597,743	+				+0.8
4,597,743	+				-0.4
4,597,751	-				+0.7
4,597,751	-				+0.7
4,597,766	-				-1.8
4,597,766	-				-0.3
4,597,774	+				+1.0
4,597,797	-				+1.1
4,597,850	+		BWI76_RS22010	0.15	-1.3
4,597,850	+		BWI76_RS22010	0.15	+2.0
4,597,852	-		BWI76_RS22010	0.15	-1.3
4,597,857	+		BWI76_RS22010	0.16	+2.2
4,597,857	+		BWI76_RS22010	0.16	-2.9
4,597,857	+		BWI76_RS22010	0.16	+1.0
4,597,858	-		BWI76_RS22010	0.17	-2.4
4,597,865	-		BWI76_RS22010	0.18	+1.0
4,597,865	-		BWI76_RS22010	0.18	-1.3
4,597,865	-		BWI76_RS22010	0.18	-0.7
4,597,867	+		BWI76_RS22010	0.19	+1.7
4,597,880	-		BWI76_RS22010	0.22	-0.7
4,597,890	-		BWI76_RS22010	0.25	-0.6
4,597,920	+		BWI76_RS22010	0.32	-1.8
4,597,951	+		BWI76_RS22010	0.40	-1.0
4,597,951	+		BWI76_RS22010	0.40	+0.3
4,597,951	+		BWI76_RS22010	0.40	-1.7
4,597,959	-		BWI76_RS22010	0.42	+0.9
4,597,959	-		BWI76_RS22010	0.42	+1.0
4,597,959	-		BWI76_RS22010	0.42	+0.5
4,597,964	-		BWI76_RS22010	0.43	-2.7
4,597,978	+		BWI76_RS22010	0.47	-2.1
4,597,978	+		BWI76_RS22010	0.47	-0.2
4,597,978	+		BWI76_RS22010	0.47	-1.0
4,597,979	+		BWI76_RS22010	0.47	-0.3
4,597,981	-		BWI76_RS22010	0.47	-2.9
4,597,981	-		BWI76_RS22010	0.47	+1.5
4,597,987	-		BWI76_RS22010	0.49	-0.2
4,598,025	+		BWI76_RS22010	0.58	+0.5
4,598,041	-		BWI76_RS22010	0.62	-0.2
4,598,045	+		BWI76_RS22010	0.63	+1.0
4,598,045	+		BWI76_RS22010	0.63	+0.3
4,598,045	+		BWI76_RS22010	0.63	-3.0
4,598,045	+		BWI76_RS22010	0.63	-3.4
4,598,054	-		BWI76_RS22010	0.65	-0.1
4,598,054	-		BWI76_RS22010	0.65	-0.3
4,598,054	-		BWI76_RS22010	0.65	-0.2
4,598,054	-		BWI76_RS22010	0.65	-0.3
4,598,064	-		BWI76_RS22010	0.68	+1.0
4,598,071	-		BWI76_RS22010	0.70	-1.3
4,598,089	+		BWI76_RS22010	0.74	+1.0
4,598,089	+		BWI76_RS22010	0.74	-1.0
4,598,091	-		BWI76_RS22010	0.75	-0.6
4,598,095	+		BWI76_RS22010	0.76	-1.3
4,598,095	+		BWI76_RS22010	0.76	-3.0
4,598,096	+		BWI76_RS22010	0.76	-1.0
4,598,097	-		BWI76_RS22010	0.76	-0.4
4,598,097	-		BWI76_RS22010	0.76	+0.0
4,598,097	-		BWI76_RS22010	0.76	+1.8
4,598,097	-		BWI76_RS22010	0.76	+0.1
4,598,103	-		BWI76_RS22010	0.78	-0.1
4,598,105	+		BWI76_RS22010	0.78	-1.0
4,598,105	+		BWI76_RS22010	0.78	-2.6
4,598,128	-		BWI76_RS22010	0.84	-0.1
4,598,128	-		BWI76_RS22010	0.84	-2.6
4,598,128	-		BWI76_RS22010	0.84	-0.9
4,598,128	-		BWI76_RS22010	0.84	-1.8
4,598,128	-				+1.0
4,598,250	-				+0.2
4,598,365	-				+0.0
4,598,365	-				-0.6
4,598,391	+				-2.1
4,598,391	+				+0.0
4,598,419	+				-2.0
4,598,428	-				+1.3
4,598,428	-				-1.3
4,598,428	-				-3.0
4,598,434	+				+1.0
4,598,439	+				-2.7
4,598,444	+				-0.4
4,598,444	+				-0.8
4,598,444	+				+0.0
4,598,452	-				+0.3
4,598,454	+				-2.1
4,598,459	+				+0.3
4,598,462	-				-0.6
4,598,472	-				-2.0
4,598,472	-				-2.1
4,598,593	+				+0.2
4,598,596	-				+1.8
4,598,596	-				-0.6
4,598,730	+		BWI76_RS22015	0.28	-0.8
4,598,742	+		BWI76_RS22015	0.33	-0.1
4,598,750	-		BWI76_RS22015	0.36	-3.0
4,598,820	+		BWI76_RS22015	0.67	-2.1
4,598,820	+		BWI76_RS22015	0.67	-1.3
4,598,828	-		BWI76_RS22015	0.71	-1.3
4,598,828	-		BWI76_RS22015	0.71	-0.5
4,598,828	-		BWI76_RS22015	0.71	-0.3
4,598,889	-				-0.9
4,598,903	+				-1.0
4,598,903	+				-0.1
4,598,903	+				+0.0
4,598,903	+				-0.6
4,598,908	+				+0.0
4,598,908	+				-1.5
4,598,911	-				+0.4
4,598,916	-				-1.6
4,598,935	+				-2.7
4,598,942	+				+0.0
4,598,950	-		BWI76_RS22020	0.11	-1.6
4,598,950	-		BWI76_RS22020	0.11	+1.9
4,598,976	-		BWI76_RS22020	0.17	+1.0
4,599,130	-		BWI76_RS22020	0.51	+0.7
4,599,218	+		BWI76_RS22020	0.70	-0.7
4,599,302	+				+1.0
4,599,337	+				+0.1
4,599,346	-				-1.6
4,599,351	-				-0.3
4,599,383	-				+0.2
4,599,402	-				+1.0
4,599,458	-		BWI76_RS22025	0.19	-0.6
4,599,470	+		BWI76_RS22025	0.23	+1.8
4,599,470	+		BWI76_RS22025	0.23	-0.2
4,599,470	+		BWI76_RS22025	0.23	-2.4
4,599,470	+		BWI76_RS22025	0.23	-1.0
4,599,478	-		BWI76_RS22025	0.25	-1.8
4,599,478	-		BWI76_RS22025	0.25	+0.9
4,599,552	+		BWI76_RS22025	0.46	-1.5
4,599,558	+		BWI76_RS22025	0.48	+1.0
4,599,558	+		BWI76_RS22025	0.48	-0.4
4,599,560	-		BWI76_RS22025	0.48	+0.3
4,599,563	+		BWI76_RS22025	0.49	+1.0
4,599,563	+		BWI76_RS22025	0.49	-1.1
4,599,566	-		BWI76_RS22025	0.50	-0.9
4,599,571	-		BWI76_RS22025	0.51	-0.6
4,599,571	-		BWI76_RS22025	0.51	-0.4
4,599,581	-		BWI76_RS22025	0.54	-0.5
4,599,607	+		BWI76_RS22025	0.62	-2.6
4,599,607	+		BWI76_RS22025	0.62	+0.2
4,599,607	+		BWI76_RS22025	0.62	-1.1
4,599,607	+		BWI76_RS22025	0.62	+0.1
4,599,614	-		BWI76_RS22025	0.64	+0.0
4,599,615	-		BWI76_RS22025	0.64	+0.9
4,599,615	-		BWI76_RS22025	0.64	+0.6
4,599,615	-		BWI76_RS22025	0.64	+0.2
4,599,618	-		BWI76_RS22025	0.65	+1.6
4,599,651	+		BWI76_RS22025	0.74	+0.0
4,599,652	+		BWI76_RS22025	0.74	-2.5
4,599,658	+		BWI76_RS22025	0.76	+0.5
4,599,659	-		BWI76_RS22025	0.76	-0.5
4,599,659	-		BWI76_RS22025	0.76	-1.1
4,599,660	-		BWI76_RS22025	0.77	-1.5
4,599,660	-		BWI76_RS22025	0.77	-0.2
4,599,661	-		BWI76_RS22025	0.77	-1.8
4,599,666	-		BWI76_RS22025	0.78	+0.0
4,599,681	+		BWI76_RS22025	0.83	-0.1
4,599,767	+				-1.9
4,599,768	+				+1.5
4,599,768	+				+0.6
4,599,769	+				+0.5
4,599,775	-				+1.5
4,599,776	-				+0.4
4,599,776	-				+0.3
4,599,776	-				-0.7
4,599,776	-				+0.5
4,599,779	+				-2.1
4,599,781	-				-1.2
4,599,781	-				+1.4
4,599,782	-				+0.2
4,599,782	-				+0.2
4,599,823	+				+3.3
4,599,831	-				+0.3
4,599,858	+				-3.1
4,599,858	+				-2.8
4,599,858	+				-0.4
4,599,858	+				+0.5
4,599,858	+				+0.0
4,599,858	+				-1.6
4,599,858	+				+0.1
4,599,858	+				-1.6
4,599,858	+				+0.4
4,599,858	-				-1.0
4,599,858	-				+1.0
4,599,866	-				-0.7
4,599,866	-				-0.0
4,599,866	-				-0.0
4,599,866	-				-0.7
4,599,866	-				-0.6
4,599,866	-				+0.8
4,599,866	-				+0.3
4,599,874	+				+1.0