Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18810

Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS18805 and BWI76_RS18810 are separated by 404 nucleotidesBWI76_RS18810 and BWI76_RS18815 are separated by 16 nucleotides BWI76_RS18805: BWI76_RS18805 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 3,897,471 to 3,900,986 _RS18805 BWI76_RS18810: BWI76_RS18810 - nitrogenase iron protein, at 3,901,391 to 3,902,272 _RS18810 BWI76_RS18815: BWI76_RS18815 - nitrogenase molybdenum-iron protein alpha chain, at 3,902,289 to 3,903,737 _RS18815 Position (kb) 3901 3902 3903Strain fitness (log2 ratio) -2 -1 0 1at 3900.424 kb on + strand, within BWI76_RS18805at 3900.495 kb on - strand, within BWI76_RS18805at 3901.153 kb on + strandat 3901.185 kb on - strandat 3901.401 kb on - strandat 3901.456 kb on - strandat 3901.456 kb on - strandat 3901.791 kb on - strand, within BWI76_RS18810at 3902.172 kb on - strand, within BWI76_RS18810at 3902.334 kb on + strandat 3902.450 kb on - strand, within BWI76_RS18815

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml
remove
3,900,424 + BWI76_RS18805 0.84 -2.1
3,900,495 - BWI76_RS18805 0.86 +0.3
3,901,153 + +1.0
3,901,185 - +0.3
3,901,401 - +0.9
3,901,456 - +1.0
3,901,456 - +0.9
3,901,791 - BWI76_RS18810 0.45 +1.5
3,902,172 - BWI76_RS18810 0.89 +0.6
3,902,334 + +1.2
3,902,450 - BWI76_RS18815 0.11 +0.2

Or see this region's nucleotide sequence