Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05675 and BWI76_RS05680 are separated by 438 nucleotides BWI76_RS05680 and BWI76_RS05685 are separated by 251 nucleotides
BWI76_RS05675: BWI76_RS05675 - MFS transporter, at 1,192,196 to 1,193,593
_RS05675
BWI76_RS05680: BWI76_RS05680 - LacI family transcriptional regulator, at 1,194,032 to 1,195,063
_RS05680
BWI76_RS05685: BWI76_RS05685 - dihydrodipicolinate synthase family protein, at 1,195,315 to 1,196,244
_RS05685
Position (kb)
1194
1195
1196 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1193.074 kb on - strand, within BWI76_RS05675 at 1193.180 kb on - strand, within BWI76_RS05675 at 1193.254 kb on - strand, within BWI76_RS05675 at 1193.260 kb on + strand, within BWI76_RS05675 at 1193.336 kb on - strand, within BWI76_RS05675 at 1193.380 kb on + strand, within BWI76_RS05675 at 1193.587 kb on - strand at 1193.595 kb on + strand at 1193.605 kb on + strand at 1193.646 kb on + strand at 1193.669 kb on - strand at 1193.913 kb on - strand at 1194.009 kb on + strand at 1194.323 kb on - strand, within BWI76_RS05680 at 1194.407 kb on + strand, within BWI76_RS05680 at 1194.473 kb on + strand, within BWI76_RS05680 at 1194.530 kb on - strand, within BWI76_RS05680 at 1194.621 kb on - strand, within BWI76_RS05680 at 1195.023 kb on + strand at 1195.441 kb on + strand, within BWI76_RS05685 at 1195.681 kb on + strand, within BWI76_RS05685 at 1195.691 kb on + strand, within BWI76_RS05685 at 1195.740 kb on + strand, within BWI76_RS05685 at 1195.887 kb on - strand, within BWI76_RS05685 at 1195.920 kb on + strand, within BWI76_RS05685 at 1195.926 kb on - strand, within BWI76_RS05685 at 1195.939 kb on - strand, within BWI76_RS05685 at 1195.945 kb on - strand, within BWI76_RS05685 at 1196.021 kb on + strand, within BWI76_RS05685 at 1196.030 kb on - strand, within BWI76_RS05685
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml remove 1,193,074 - BWI76_RS05675 0.63 +1.1 1,193,180 - BWI76_RS05675 0.70 -0.2 1,193,254 - BWI76_RS05675 0.76 -3.4 1,193,260 + BWI76_RS05675 0.76 -2.5 1,193,336 - BWI76_RS05675 0.82 +1.0 1,193,380 + BWI76_RS05675 0.85 +0.6 1,193,587 - +1.0 1,193,595 + -0.0 1,193,605 + +0.6 1,193,646 + +0.0 1,193,669 - -1.6 1,193,913 - -0.2 1,194,009 + -0.8 1,194,323 - BWI76_RS05680 0.28 -3.0 1,194,407 + BWI76_RS05680 0.36 -3.5 1,194,473 + BWI76_RS05680 0.43 -1.0 1,194,530 - BWI76_RS05680 0.48 -1.4 1,194,621 - BWI76_RS05680 0.57 -2.4 1,195,023 + -1.0 1,195,441 + BWI76_RS05685 0.14 -1.6 1,195,681 + BWI76_RS05685 0.39 +1.3 1,195,691 + BWI76_RS05685 0.40 -1.0 1,195,740 + BWI76_RS05685 0.46 +1.3 1,195,887 - BWI76_RS05685 0.62 +3.3 1,195,920 + BWI76_RS05685 0.65 +0.1 1,195,926 - BWI76_RS05685 0.66 -1.6 1,195,939 - BWI76_RS05685 0.67 +1.4 1,195,945 - BWI76_RS05685 0.68 -1.0 1,196,021 + BWI76_RS05685 0.76 +0.1 1,196,030 - BWI76_RS05685 0.77 -3.1
Or see this region's nucleotide sequence