Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04890 and BWI76_RS04895 are separated by 162 nucleotides BWI76_RS04895 and BWI76_RS04900 are separated by 50 nucleotides BWI76_RS04900 and BWI76_RS04905 are separated by 10 nucleotides
BWI76_RS04890: BWI76_RS04890 - dihydrolipoyl dehydrogenase, at 1,024,781 to 1,026,205
_RS04890
BWI76_RS04895: BWI76_RS04895 - hypothetical protein, at 1,026,368 to 1,026,652
_RS04895
BWI76_RS04900: BWI76_RS04900 - DUF2950 domain-containing protein, at 1,026,703 to 1,027,497
_RS04900
BWI76_RS04905: BWI76_RS04905 - DUF3300 domain-containing protein, at 1,027,508 to 1,029,094
_RS04905
Position (kb)
1026
1027
1028 Strain fitness (log2 ratio)
-1
0
1
2 at 1026.265 kb on + strand at 1026.273 kb on - strand at 1026.273 kb on - strand at 1026.384 kb on - strand at 1026.400 kb on - strand, within BWI76_RS04895 at 1026.416 kb on + strand, within BWI76_RS04895 at 1026.424 kb on - strand, within BWI76_RS04895 at 1026.944 kb on - strand, within BWI76_RS04900 at 1027.291 kb on - strand, within BWI76_RS04900 at 1027.562 kb on - strand at 1027.630 kb on - strand at 1027.667 kb on - strand, within BWI76_RS04905 at 1027.786 kb on + strand, within BWI76_RS04905 at 1028.048 kb on - strand, within BWI76_RS04905 at 1028.268 kb on + strand, within BWI76_RS04905
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml remove 1,026,265 + -0.1 1,026,273 - -0.0 1,026,273 - +1.3 1,026,384 - -0.7 1,026,400 - BWI76_RS04895 0.11 +2.7 1,026,416 + BWI76_RS04895 0.17 -0.6 1,026,424 - BWI76_RS04895 0.20 +0.2 1,026,944 - BWI76_RS04900 0.30 +0.4 1,027,291 - BWI76_RS04900 0.74 +0.2 1,027,562 - -1.3 1,027,630 - +1.0 1,027,667 - BWI76_RS04905 0.10 -1.6 1,027,786 + BWI76_RS04905 0.18 +0.1 1,028,048 - BWI76_RS04905 0.34 +0.8 1,028,268 + BWI76_RS04905 0.48 -1.0
Or see this region's nucleotide sequence