Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04045 and BWI76_RS04050 are separated by 47 nucleotides BWI76_RS04050 and BWI76_RS04055 are separated by 108 nucleotides BWI76_RS04055 and BWI76_RS04060 are separated by 262 nucleotides BWI76_RS04060 and BWI76_RS04065 are separated by 20 nucleotides BWI76_RS04065 and BWI76_RS04070 are separated by 31 nucleotides BWI76_RS04070 and BWI76_RS04075 are separated by 28 nucleotides
BWI76_RS04045: BWI76_RS04045 - PTS system lactose/cellobiose-specific transporter subunit IIC, at 835,914 to 837,257
_RS04045
BWI76_RS04050: BWI76_RS04050 - hydroxamate siderophore iron reductase FhuF, at 837,305 to 838,093
_RS04050
BWI76_RS04055: BWI76_RS04055 - GGDEF domain-containing protein, at 838,202 to 839,248
_RS04055
BWI76_RS04060: BWI76_RS04060 - hypothetical protein, at 839,511 to 839,750
_RS04060
BWI76_RS04065: BWI76_RS04065 - tRNA-Leu, at 839,771 to 839,857
_RS04065
BWI76_RS04070: BWI76_RS04070 - tRNA-Leu, at 839,889 to 839,975
_RS04070
BWI76_RS04075: BWI76_RS04075 - tRNA-Leu, at 840,004 to 840,090
_RS04075
Position (kb) 838
839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 837.337 kb on - strand at 837.366 kb on - strand at 837.434 kb on - strand, within BWI76_RS04050 at 837.572 kb on + strand, within BWI76_RS04050 at 837.777 kb on - strand at 837.839 kb on + strand, within BWI76_RS04050 at 837.906 kb on + strand, within BWI76_RS04050 at 837.946 kb on - strand, within BWI76_RS04050 at 837.956 kb on - strand, within BWI76_RS04050 at 837.970 kb on - strand, within BWI76_RS04050 at 838.030 kb on + strand at 838.032 kb on + strand at 838.032 kb on + strand at 838.032 kb on + strand at 838.040 kb on - strand at 838.308 kb on - strand, within BWI76_RS04055 at 838.405 kb on - strand, within BWI76_RS04055 at 838.463 kb on + strand, within BWI76_RS04055 at 838.534 kb on + strand, within BWI76_RS04055 at 838.535 kb on + strand, within BWI76_RS04055 at 838.605 kb on - strand, within BWI76_RS04055 at 838.605 kb on - strand, within BWI76_RS04055 at 838.607 kb on + strand, within BWI76_RS04055 at 838.607 kb on + strand at 838.610 kb on - strand, within BWI76_RS04055 at 838.615 kb on - strand, within BWI76_RS04055 at 838.616 kb on - strand, within BWI76_RS04055 at 838.624 kb on - strand, within BWI76_RS04055 at 838.660 kb on - strand, within BWI76_RS04055 at 838.662 kb on + strand, within BWI76_RS04055 at 838.677 kb on + strand, within BWI76_RS04055 at 838.690 kb on + strand, within BWI76_RS04055 at 838.690 kb on + strand, within BWI76_RS04055 at 838.698 kb on - strand at 838.705 kb on - strand, within BWI76_RS04055 at 838.706 kb on - strand, within BWI76_RS04055 at 838.732 kb on - strand, within BWI76_RS04055 at 838.759 kb on + strand, within BWI76_RS04055 at 838.767 kb on - strand, within BWI76_RS04055 at 838.769 kb on + strand, within BWI76_RS04055 at 838.783 kb on - strand, within BWI76_RS04055 at 838.802 kb on + strand, within BWI76_RS04055 at 838.803 kb on + strand, within BWI76_RS04055 at 838.810 kb on - strand, within BWI76_RS04055 at 838.811 kb on - strand, within BWI76_RS04055 at 838.811 kb on - strand, within BWI76_RS04055 at 838.820 kb on + strand, within BWI76_RS04055 at 838.820 kb on + strand, within BWI76_RS04055 at 838.820 kb on + strand, within BWI76_RS04055 at 838.820 kb on + strand, within BWI76_RS04055 at 838.828 kb on - strand, within BWI76_RS04055 at 838.848 kb on - strand, within BWI76_RS04055 at 838.848 kb on - strand, within BWI76_RS04055 at 838.848 kb on - strand, within BWI76_RS04055 at 838.850 kb on + strand, within BWI76_RS04055 at 838.850 kb on + strand, within BWI76_RS04055 at 838.850 kb on + strand, within BWI76_RS04055 at 838.850 kb on + strand, within BWI76_RS04055 at 838.857 kb on - strand, within BWI76_RS04055 at 838.867 kb on - strand, within BWI76_RS04055 at 838.867 kb on - strand, within BWI76_RS04055 at 838.871 kb on + strand, within BWI76_RS04055 at 838.871 kb on - strand, within BWI76_RS04055 at 838.876 kb on + strand, within BWI76_RS04055 at 838.876 kb on - strand, within BWI76_RS04055 at 838.942 kb on + strand, within BWI76_RS04055 at 838.987 kb on + strand, within BWI76_RS04055 at 838.996 kb on + strand, within BWI76_RS04055 at 839.001 kb on + strand, within BWI76_RS04055 at 839.001 kb on + strand, within BWI76_RS04055 at 839.001 kb on + strand, within BWI76_RS04055 at 839.004 kb on - strand, within BWI76_RS04055 at 839.004 kb on - strand, within BWI76_RS04055 at 839.009 kb on - strand, within BWI76_RS04055 at 839.009 kb on - strand, within BWI76_RS04055 at 839.009 kb on - strand, within BWI76_RS04055 at 839.011 kb on + strand, within BWI76_RS04055 at 839.011 kb on + strand, within BWI76_RS04055 at 839.058 kb on + strand, within BWI76_RS04055 at 839.058 kb on + strand, within BWI76_RS04055 at 839.058 kb on + strand, within BWI76_RS04055 at 839.058 kb on + strand, within BWI76_RS04055 at 839.058 kb on + strand, within BWI76_RS04055 at 839.058 kb on + strand, within BWI76_RS04055 at 839.066 kb on + strand, within BWI76_RS04055 at 839.066 kb on + strand, within BWI76_RS04055 at 839.066 kb on + strand, within BWI76_RS04055 at 839.066 kb on + strand, within BWI76_RS04055 at 839.066 kb on - strand, within BWI76_RS04055 at 839.074 kb on - strand, within BWI76_RS04055 at 839.075 kb on + strand, within BWI76_RS04055 at 839.075 kb on + strand at 839.075 kb on + strand, within BWI76_RS04055 at 839.075 kb on + strand, within BWI76_RS04055 at 839.075 kb on - strand, within BWI76_RS04055 at 839.080 kb on + strand, within BWI76_RS04055 at 839.083 kb on - strand, within BWI76_RS04055 at 839.083 kb on - strand, within BWI76_RS04055 at 839.083 kb on - strand, within BWI76_RS04055 at 839.083 kb on - strand, within BWI76_RS04055 at 839.088 kb on - strand, within BWI76_RS04055 at 839.088 kb on - strand, within BWI76_RS04055 at 839.098 kb on - strand, within BWI76_RS04055 at 839.101 kb on + strand, within BWI76_RS04055 at 839.106 kb on + strand, within BWI76_RS04055 at 839.109 kb on - strand, within BWI76_RS04055 at 839.111 kb on + strand, within BWI76_RS04055 at 839.111 kb on + strand, within BWI76_RS04055 at 839.111 kb on + strand, within BWI76_RS04055 at 839.114 kb on - strand, within BWI76_RS04055 at 839.114 kb on - strand, within BWI76_RS04055 at 839.114 kb on - strand, within BWI76_RS04055 at 839.114 kb on - strand, within BWI76_RS04055 at 839.116 kb on + strand, within BWI76_RS04055 at 839.116 kb on + strand, within BWI76_RS04055 at 839.116 kb on + strand, within BWI76_RS04055 at 839.116 kb on + strand, within BWI76_RS04055 at 839.116 kb on + strand, within BWI76_RS04055 at 839.116 kb on + strand, within BWI76_RS04055 at 839.116 kb on + strand, within BWI76_RS04055 at 839.116 kb on + strand, within BWI76_RS04055 at 839.116 kb on + strand, within BWI76_RS04055 at 839.116 kb on + strand, within BWI76_RS04055 at 839.116 kb on + strand, within BWI76_RS04055 at 839.119 kb on - strand at 839.119 kb on - strand, within BWI76_RS04055 at 839.124 kb on - strand, within BWI76_RS04055 at 839.124 kb on - strand, within BWI76_RS04055 at 839.124 kb on - strand, within BWI76_RS04055 at 839.124 kb on - strand, within BWI76_RS04055 at 839.124 kb on - strand, within BWI76_RS04055 at 839.124 kb on - strand, within BWI76_RS04055 at 839.124 kb on - strand, within BWI76_RS04055 at 839.124 kb on - strand, within BWI76_RS04055 at 839.124 kb on - strand, within BWI76_RS04055 at 839.124 kb on - strand, within BWI76_RS04055 at 839.124 kb on - strand, within BWI76_RS04055 at 839.124 kb on - strand, within BWI76_RS04055 at 839.124 kb on - strand, within BWI76_RS04055 at 839.124 kb on - strand, within BWI76_RS04055 at 839.124 kb on - strand, within BWI76_RS04055 at 839.130 kb on + strand, within BWI76_RS04055 at 839.138 kb on - strand, within BWI76_RS04055 at 839.138 kb on - strand, within BWI76_RS04055 at 839.140 kb on - strand, within BWI76_RS04055 at 839.141 kb on - strand, within BWI76_RS04055 at 839.145 kb on - strand at 839.145 kb on - strand at 839.163 kb on + strand at 839.172 kb on + strand at 839.172 kb on + strand at 839.218 kb on + strand at 839.228 kb on - strand at 839.229 kb on + strand at 839.229 kb on + strand at 839.229 kb on + strand at 839.229 kb on + strand at 839.229 kb on + strand at 839.229 kb on + strand at 839.229 kb on + strand at 839.234 kb on + strand at 839.236 kb on - strand at 839.237 kb on - strand at 839.237 kb on - strand at 839.237 kb on - strand at 839.237 kb on - strand at 839.237 kb on - strand at 839.237 kb on - strand at 839.237 kb on - strand at 839.239 kb on + strand at 839.239 kb on + strand at 839.239 kb on + strand at 839.244 kb on + strand at 839.248 kb on + strand at 839.253 kb on + strand at 839.289 kb on - strand at 839.292 kb on + strand at 839.386 kb on + strand at 839.398 kb on + strand at 839.422 kb on + strand at 839.422 kb on + strand at 839.422 kb on + strand at 839.422 kb on + strand at 839.430 kb on - strand at 839.430 kb on - strand at 839.430 kb on - strand at 839.531 kb on - strand at 839.555 kb on - strand, within BWI76_RS04060 at 839.638 kb on - strand, within BWI76_RS04060 at 839.697 kb on + strand, within BWI76_RS04060
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml remove 837,337 - -1.3 837,366 - +1.1 837,434 - BWI76_RS04050 0.16 -0.6 837,572 + BWI76_RS04050 0.34 +1.0 837,777 - +1.0 837,839 + BWI76_RS04050 0.68 -0.0 837,906 + BWI76_RS04050 0.76 -1.0 837,946 - BWI76_RS04050 0.81 -0.8 837,956 - BWI76_RS04050 0.83 +3.3 837,970 - BWI76_RS04050 0.84 +1.0 838,030 + +1.7 838,032 + -0.0 838,032 + +0.8 838,032 + -1.0 838,040 - +1.2 838,308 - BWI76_RS04055 0.10 +1.9 838,405 - BWI76_RS04055 0.19 -0.2 838,463 + BWI76_RS04055 0.25 +2.2 838,534 + BWI76_RS04055 0.32 +2.2 838,535 + BWI76_RS04055 0.32 +1.8 838,605 - BWI76_RS04055 0.38 +1.7 838,605 - BWI76_RS04055 0.38 +1.8 838,607 + BWI76_RS04055 0.39 +1.0 838,607 + +1.0 838,610 - BWI76_RS04055 0.39 +2.2 838,615 - BWI76_RS04055 0.39 -0.0 838,616 - BWI76_RS04055 0.40 +2.0 838,624 - BWI76_RS04055 0.40 +1.6 838,660 - BWI76_RS04055 0.44 +1.0 838,662 + BWI76_RS04055 0.44 +2.0 838,677 + BWI76_RS04055 0.45 -2.0 838,690 + BWI76_RS04055 0.47 +1.0 838,690 + BWI76_RS04055 0.47 +1.6 838,698 - +1.0 838,705 - BWI76_RS04055 0.48 -1.0 838,706 - BWI76_RS04055 0.48 +0.6 838,732 - BWI76_RS04055 0.51 +1.6 838,759 + BWI76_RS04055 0.53 +2.2 838,767 - BWI76_RS04055 0.54 +2.7 838,769 + BWI76_RS04055 0.54 +1.4 838,783 - BWI76_RS04055 0.55 +1.0 838,802 + BWI76_RS04055 0.57 +0.2 838,803 + BWI76_RS04055 0.57 +0.9 838,810 - BWI76_RS04055 0.58 +1.0 838,811 - BWI76_RS04055 0.58 +1.6 838,811 - BWI76_RS04055 0.58 +2.4 838,820 + BWI76_RS04055 0.59 -0.3 838,820 + BWI76_RS04055 0.59 +0.2 838,820 + BWI76_RS04055 0.59 +2.0 838,820 + BWI76_RS04055 0.59 +1.1 838,828 - BWI76_RS04055 0.60 -1.0 838,848 - BWI76_RS04055 0.62 +1.5 838,848 - BWI76_RS04055 0.62 +0.3 838,848 - BWI76_RS04055 0.62 -0.0 838,850 + BWI76_RS04055 0.62 +1.0 838,850 + BWI76_RS04055 0.62 +1.9 838,850 + BWI76_RS04055 0.62 -1.3 838,850 + BWI76_RS04055 0.62 +1.0 838,857 - BWI76_RS04055 0.63 +2.3 838,867 - BWI76_RS04055 0.64 +1.8 838,867 - BWI76_RS04055 0.64 +1.6 838,871 + BWI76_RS04055 0.64 +1.0 838,871 - BWI76_RS04055 0.64 +1.3 838,876 + BWI76_RS04055 0.64 +1.6 838,876 - BWI76_RS04055 0.64 +0.2 838,942 + BWI76_RS04055 0.71 +0.9 838,987 + BWI76_RS04055 0.75 +2.0 838,996 + BWI76_RS04055 0.76 -1.0 839,001 + BWI76_RS04055 0.76 +2.0 839,001 + BWI76_RS04055 0.76 +1.2 839,001 + BWI76_RS04055 0.76 +0.1 839,004 - BWI76_RS04055 0.77 -2.7 839,004 - BWI76_RS04055 0.77 +2.0 839,009 - BWI76_RS04055 0.77 +2.6 839,009 - BWI76_RS04055 0.77 +0.7 839,009 - BWI76_RS04055 0.77 +1.6 839,011 + BWI76_RS04055 0.77 +1.0 839,011 + BWI76_RS04055 0.77 +1.8 839,058 + BWI76_RS04055 0.82 -2.1 839,058 + BWI76_RS04055 0.82 +2.7 839,058 + BWI76_RS04055 0.82 +1.4 839,058 + BWI76_RS04055 0.82 +1.7 839,058 + BWI76_RS04055 0.82 -0.6 839,058 + BWI76_RS04055 0.82 +1.4 839,066 + BWI76_RS04055 0.83 +1.3 839,066 + BWI76_RS04055 0.83 +2.6 839,066 + BWI76_RS04055 0.83 +2.6 839,066 + BWI76_RS04055 0.83 +0.6 839,066 - BWI76_RS04055 0.83 -0.0 839,074 - BWI76_RS04055 0.83 +1.9 839,075 + BWI76_RS04055 0.83 +2.0 839,075 + +2.6 839,075 + BWI76_RS04055 0.83 +1.5 839,075 + BWI76_RS04055 0.83 +2.5 839,075 - BWI76_RS04055 0.83 -0.6 839,080 + BWI76_RS04055 0.84 +2.3 839,083 - BWI76_RS04055 0.84 +2.3 839,083 - BWI76_RS04055 0.84 +1.1 839,083 - BWI76_RS04055 0.84 +2.8 839,083 - BWI76_RS04055 0.84 -0.0 839,088 - BWI76_RS04055 0.85 +1.2 839,088 - BWI76_RS04055 0.85 -0.6 839,098 - BWI76_RS04055 0.86 +0.8 839,101 + BWI76_RS04055 0.86 -0.0 839,106 + BWI76_RS04055 0.86 +2.1 839,109 - BWI76_RS04055 0.87 +0.6 839,111 + BWI76_RS04055 0.87 -0.2 839,111 + BWI76_RS04055 0.87 +0.1 839,111 + BWI76_RS04055 0.87 +2.1 839,114 - BWI76_RS04055 0.87 +0.5 839,114 - BWI76_RS04055 0.87 +2.7 839,114 - BWI76_RS04055 0.87 +1.0 839,114 - BWI76_RS04055 0.87 +0.9 839,116 + BWI76_RS04055 0.87 -0.5 839,116 + BWI76_RS04055 0.87 -1.2 839,116 + BWI76_RS04055 0.87 +0.7 839,116 + BWI76_RS04055 0.87 +2.1 839,116 + BWI76_RS04055 0.87 +1.2 839,116 + BWI76_RS04055 0.87 +0.3 839,116 + BWI76_RS04055 0.87 +3.0 839,116 + BWI76_RS04055 0.87 +2.2 839,116 + BWI76_RS04055 0.87 -1.0 839,116 + BWI76_RS04055 0.87 -1.3 839,116 + BWI76_RS04055 0.87 -0.0 839,119 - -0.0 839,119 - BWI76_RS04055 0.88 +3.3 839,124 - BWI76_RS04055 0.88 +2.0 839,124 - BWI76_RS04055 0.88 +3.7 839,124 - BWI76_RS04055 0.88 +3.5 839,124 - BWI76_RS04055 0.88 +1.3 839,124 - BWI76_RS04055 0.88 +2.2 839,124 - BWI76_RS04055 0.88 +1.2 839,124 - BWI76_RS04055 0.88 +0.7 839,124 - BWI76_RS04055 0.88 -2.2 839,124 - BWI76_RS04055 0.88 +1.4 839,124 - BWI76_RS04055 0.88 +2.4 839,124 - BWI76_RS04055 0.88 -0.0 839,124 - BWI76_RS04055 0.88 +3.7 839,124 - BWI76_RS04055 0.88 +1.4 839,124 - BWI76_RS04055 0.88 -0.6 839,124 - BWI76_RS04055 0.88 -1.4 839,130 + BWI76_RS04055 0.89 +2.1 839,138 - BWI76_RS04055 0.89 +1.5 839,138 - BWI76_RS04055 0.89 -1.6 839,140 - BWI76_RS04055 0.90 +2.9 839,141 - BWI76_RS04055 0.90 +1.0 839,145 - +0.9 839,145 - +1.0 839,163 + +1.4 839,172 + -2.0 839,172 + +0.7 839,218 + +1.2 839,228 - +0.4 839,229 + +1.5 839,229 + +1.4 839,229 + +1.3 839,229 + +2.7 839,229 + -0.1 839,229 + +0.4 839,229 + +2.2 839,234 + +0.9 839,236 - +2.1 839,237 - -0.0 839,237 - +0.8 839,237 - +1.7 839,237 - +1.9 839,237 - +2.2 839,237 - -0.7 839,237 - +2.6 839,239 + -2.3 839,239 + -0.6 839,239 + +3.1 839,244 + +0.3 839,248 + +0.4 839,253 + +1.1 839,289 - -0.9 839,292 + -1.0 839,386 + +0.3 839,398 + -0.0 839,422 + +0.7 839,422 + +3.2 839,422 + +1.9 839,422 + +0.9 839,430 - +2.6 839,430 - -2.2 839,430 - +0.2 839,531 - -0.6 839,555 - BWI76_RS04060 0.18 +0.4 839,638 - BWI76_RS04060 0.53 +1.5 839,697 + BWI76_RS04060 0.78 -3.2
Or see this region's nucleotide sequence