Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02800 and BWI76_RS02805 are separated by 10 nucleotides BWI76_RS02805 and BWI76_RS02810 overlap by 14 nucleotides
BWI76_RS02800: BWI76_RS02800 - ABC transporter, at 571,292 to 572,794
_RS02800
BWI76_RS02805: BWI76_RS02805 - sugar ABC transporter permease, at 572,805 to 573,830
_RS02805
BWI76_RS02810: BWI76_RS02810 - sugar ABC transporter permease YjfF, at 573,817 to 574,803
_RS02810
Position (kb) 572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 571.814 kb on + strand, within BWI76_RS02800 at 571.912 kb on + strand, within BWI76_RS02800 at 571.912 kb on + strand, within BWI76_RS02800 at 572.002 kb on + strand, within BWI76_RS02800 at 572.058 kb on + strand, within BWI76_RS02800 at 572.586 kb on + strand, within BWI76_RS02800 at 572.633 kb on - strand at 572.689 kb on + strand at 572.739 kb on + strand at 572.865 kb on - strand at 573.046 kb on + strand, within BWI76_RS02805 at 573.263 kb on + strand, within BWI76_RS02805 at 573.268 kb on + strand, within BWI76_RS02805 at 573.526 kb on + strand, within BWI76_RS02805 at 573.558 kb on + strand, within BWI76_RS02805 at 573.881 kb on - strand at 574.280 kb on - strand, within BWI76_RS02810 at 574.280 kb on - strand, within BWI76_RS02810 at 574.549 kb on - strand, within BWI76_RS02810 at 574.598 kb on + strand, within BWI76_RS02810 at 574.690 kb on - strand, within BWI76_RS02810
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml remove 571,814 + BWI76_RS02800 0.35 +1.4 571,912 + BWI76_RS02800 0.41 +1.3 571,912 + BWI76_RS02800 0.41 +1.0 572,002 + BWI76_RS02800 0.47 -1.2 572,058 + BWI76_RS02800 0.51 +2.7 572,586 + BWI76_RS02800 0.86 +0.5 572,633 - +1.1 572,689 + -0.0 572,739 + +0.1 572,865 - -0.0 573,046 + BWI76_RS02805 0.23 -0.1 573,263 + BWI76_RS02805 0.45 -3.6 573,268 + BWI76_RS02805 0.45 -1.9 573,526 + BWI76_RS02805 0.70 -0.4 573,558 + BWI76_RS02805 0.73 -1.5 573,881 - +0.3 574,280 - BWI76_RS02810 0.47 -0.3 574,280 - BWI76_RS02810 0.47 +2.4 574,549 - BWI76_RS02810 0.74 +0.5 574,598 + BWI76_RS02810 0.79 +0.7 574,690 - BWI76_RS02810 0.88 +0.7
Or see this region's nucleotide sequence