Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS29115

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS
6,473,943	+		PFLU_RS29110	0.32	-0.8
6,473,943	+		PFLU_RS29110	0.32	+0.2
6,473,943	+		PFLU_RS29110	0.32	-2.1
6,473,943	+		PFLU_RS29110	0.32	+0.4
6,473,944	-		PFLU_RS29110	0.32	+0.5
6,474,038	+		PFLU_RS29110	0.40	-0.5
6,474,038	+		PFLU_RS29110	0.40	-0.8
6,474,038	+		PFLU_RS29110	0.40	-0.8
6,474,038	+		PFLU_RS29110	0.40	+1.2
6,474,038	+		PFLU_RS29110	0.40	-0.8
6,474,038	+		PFLU_RS29110	0.40	-0.4
6,474,039	-		PFLU_RS29110	0.40	+0.0
6,474,039	-		PFLU_RS29110	0.40	+1.2
6,474,039	-		PFLU_RS29110	0.40	+1.7
6,474,039	-		PFLU_RS29110	0.40	+1.9
6,474,039	-		PFLU_RS29110	0.40	+2.2
6,474,039	-		PFLU_RS29110	0.40	-1.3
6,474,039	-		PFLU_RS29110	0.40	-0.6
6,474,039	-		PFLU_RS29110	0.40	-1.7
6,474,039	-		PFLU_RS29110	0.40	-0.9
6,474,039	-		PFLU_RS29110	0.40	+0.2
6,474,048	+		PFLU_RS29110	0.41	+0.4
6,474,048	+		PFLU_RS29110	0.41	+0.7
6,474,048	+		PFLU_RS29110	0.41	+0.5
6,474,048	+		PFLU_RS29110	0.41	+2.6
6,474,048	+		PFLU_RS29110	0.41	-1.1
6,474,049	-		PFLU_RS29110	0.41	-0.7
6,474,049	-		PFLU_RS29110	0.41	+0.9
6,474,049	-		PFLU_RS29110	0.41	-1.7
6,474,049	-		PFLU_RS29110	0.41	-0.3
6,474,163	+		PFLU_RS29110	0.50	-2.7
6,474,163	+		PFLU_RS29110	0.50	+0.0
6,474,163	+		PFLU_RS29110	0.50	+2.1
6,474,163	+		PFLU_RS29110	0.50	-0.1
6,474,163	+		PFLU_RS29110	0.50	+0.9
6,474,163	+		PFLU_RS29110	0.50	+1.2
6,474,163	+		PFLU_RS29110	0.50	+0.4
6,474,163	+		PFLU_RS29110	0.50	-0.8
6,474,163	+		PFLU_RS29110	0.50	+0.3
6,474,164	-		PFLU_RS29110	0.50	-0.9
6,474,164	-		PFLU_RS29110	0.50	+0.5
6,474,164	-		PFLU_RS29110	0.50	+1.7
6,474,164	-		PFLU_RS29110	0.50	+2.8
6,474,164	-		PFLU_RS29110	0.50	+3.2
6,474,180	+		PFLU_RS29110	0.52	+0.9
6,474,180	+		PFLU_RS29110	0.52	-2.2
6,474,180	+		PFLU_RS29110	0.52	-1.0
6,474,180	+		PFLU_RS29110	0.52	-0.9
6,474,181	-		PFLU_RS29110	0.52	-2.4
6,474,195	+		PFLU_RS29110	0.53	-0.3
6,474,195	+		PFLU_RS29110	0.53	+0.5
6,474,195	+		PFLU_RS29110	0.53	+1.9
6,474,195	+		PFLU_RS29110	0.53	+0.3
6,474,195	+		PFLU_RS29110	0.53	+0.0
6,474,195	+		PFLU_RS29110	0.53	-2.3
6,474,195	+		PFLU_RS29110	0.53	+0.7
6,474,195	+		PFLU_RS29110	0.53	-0.5
6,474,195	+		PFLU_RS29110	0.53	-1.7
6,474,195	+		PFLU_RS29110	0.53	+0.0
6,474,195	+		PFLU_RS29110	0.53	-0.4
6,474,196	-		PFLU_RS29110	0.53	+1.5
6,474,196	-		PFLU_RS29110	0.53	+0.2
6,474,196	-		PFLU_RS29110	0.53	+0.8
6,474,196	-		PFLU_RS29110	0.53	-1.1
6,474,196	-		PFLU_RS29110	0.53	+0.2
6,474,196	-		PFLU_RS29110	0.53	+0.8
6,474,196	-		PFLU_RS29110	0.53	+1.4
6,474,196	-		PFLU_RS29110	0.53	-0.4
6,474,196	-		PFLU_RS29110	0.53	+0.3
6,474,196	-		PFLU_RS29110	0.53	+1.2
6,474,196	-		PFLU_RS29110	0.53	-0.4
6,474,196	-		PFLU_RS29110	0.53	-0.1
6,474,255	+		PFLU_RS29110	0.58	+0.0
6,474,255	+		PFLU_RS29110	0.58	+1.0
6,474,255	+		PFLU_RS29110	0.58	+0.5
6,474,255	+		PFLU_RS29110	0.58	-1.8
6,474,255	+		PFLU_RS29110	0.58	+0.4
6,474,255	+		PFLU_RS29110	0.58	+0.5
6,474,256	-		PFLU_RS29110	0.58	+0.3
6,474,256	-		PFLU_RS29110	0.58	-0.2
6,474,256	-		PFLU_RS29110	0.58	-0.1
6,474,256	-		PFLU_RS29110	0.58	-1.2
6,474,256	-		PFLU_RS29110	0.58	-2.6
6,474,256	-		PFLU_RS29110	0.58	-1.8
6,474,301	-		PFLU_RS29110	0.61	-0.8
6,474,328	+		PFLU_RS29110	0.64	+2.2
6,474,328	+		PFLU_RS29110	0.64	+0.1
6,474,329	-		PFLU_RS29110	0.64	+0.9
6,474,329	-		PFLU_RS29110	0.64	+0.8
6,474,353	+		PFLU_RS29110	0.66	-2.8
6,474,353	+		PFLU_RS29110	0.66	-1.5
6,474,354	-		PFLU_RS29110	0.66	-2.0
6,474,369	+		PFLU_RS29110	0.67	-1.7
6,474,369	+		PFLU_RS29110	0.67	+0.7
6,474,369	+		PFLU_RS29110	0.67	-1.1
6,474,369	+		PFLU_RS29110	0.67	+3.2
6,474,369	+		PFLU_RS29110	0.67	-0.2
6,474,370	-		PFLU_RS29110	0.67	-0.6
6,474,370	-		PFLU_RS29110	0.67	+1.5
6,474,370	-		PFLU_RS29110	0.67	-0.1
6,474,370	-		PFLU_RS29110	0.67	-1.4
6,474,429	+		PFLU_RS29110	0.72	-0.3
6,474,429	+		PFLU_RS29110	0.72	-2.8
6,474,429	+		PFLU_RS29110	0.72	+0.3
6,474,429	+		PFLU_RS29110	0.72	-2.2
6,474,429	+		PFLU_RS29110	0.72	-0.3
6,474,429	+		PFLU_RS29110	0.72	-1.6
6,474,429	+		PFLU_RS29110	0.72	-0.6
6,474,429	+		PFLU_RS29110	0.72	+1.6
6,474,429	+		PFLU_RS29110	0.72	-1.8
6,474,429	+		PFLU_RS29110	0.72	+0.9
6,474,429	+		PFLU_RS29110	0.72	-0.2
6,474,429	+		PFLU_RS29110	0.72	-0.6
6,474,429	+		PFLU_RS29110	0.72	-2.0
6,474,429	+		PFLU_RS29110	0.72	-0.3
6,474,429	+		PFLU_RS29110	0.72	-1.0
6,474,429	+		PFLU_RS29110	0.72	+1.3
6,474,429	+		PFLU_RS29110	0.72	+1.2
6,474,429	+		PFLU_RS29110	0.72	+1.7
6,474,430	-		PFLU_RS29110	0.72	-2.1
6,474,430	-		PFLU_RS29110	0.72	+1.1
6,474,430	-		PFLU_RS29110	0.72	-0.9
6,474,430	-		PFLU_RS29110	0.72	+0.7
6,474,504	+		PFLU_RS29110	0.78	-3.0
6,474,505	-		PFLU_RS29110	0.78	-2.1
6,474,505	-		PFLU_RS29110	0.78	-1.7
6,474,507	+		PFLU_RS29110	0.78	-1.7
6,474,507	+		PFLU_RS29110	0.78	+1.1
6,474,508	-		PFLU_RS29110	0.78	+0.4
6,474,508	-		PFLU_RS29110	0.78	-1.4
6,474,508	-		PFLU_RS29110	0.78	-1.5
6,474,520	-		PFLU_RS29110	0.79	+1.4
6,474,520	-		PFLU_RS29110	0.79	+0.4
6,474,520	-		PFLU_RS29110	0.79	-1.9
6,474,601	-		PFLU_RS29110	0.86	+0.2
6,474,601	-		PFLU_RS29110	0.86	-0.7
6,474,601	-		PFLU_RS29110	0.86	-0.3
6,474,601	-		PFLU_RS29110	0.86	+0.9
6,474,673	+				-1.6
6,474,673	+				+1.8
6,474,673	+				-1.5
6,474,673	+				+0.4
6,474,674	-				-1.8
6,474,674	-				+0.3
6,474,674	-				-1.8
6,474,674	-				+2.6
6,474,674	-				-2.1
6,474,674	-				+0.8
6,474,674	-				+1.0
6,474,691	-				+1.5
6,474,794	-				-2.4
6,474,794	-				-0.6
6,474,802	+				-1.6
6,474,803	-				+0.7
6,474,803	-				-1.3
6,474,813	+				-0.7
6,474,813	+				-0.1
6,474,813	+				+0.9
6,474,813	+				+1.5
6,474,813	+				+1.4
6,474,813	+				-0.1
6,474,813	+				+0.7
6,474,814	-				-2.3
6,474,814	-				-2.1
6,474,814	-				-2.9
6,474,814	-				+0.2
6,474,814	-				-1.8
6,474,814	-				+0.2
6,474,814	-				+0.6
6,474,814	-				+1.1
6,474,814	-				+1.1
6,474,814	-				+0.5
6,474,856	+				+0.4
6,474,856	+				+1.6
6,474,856	+				+0.2
6,474,856	+				-1.6
6,474,856	+				-1.8
6,474,856	+				+1.2
6,474,856	+				-0.9
6,474,856	+				-1.3
6,474,857	-				+2.0
6,474,857	-				+1.5
6,474,857	-				+0.7
6,474,857	-				+0.2
6,474,857	-				+0.3
6,474,859	+				+0.7
6,474,859	+				-0.6
6,474,859	+				-0.6
6,474,859	+				-2.2
6,474,867	+				+0.4
6,474,938	-				-0.5
6,474,938	-				+0.2
6,474,938	-				-0.8
6,474,938	-				-2.5
6,475,085	+		PFLU_RS29115	0.29	-1.2
6,475,085	+		PFLU_RS29115	0.29	-0.6
6,475,085	+		PFLU_RS29115	0.29	+1.6
6,475,085	+		PFLU_RS29115	0.29	+2.2
6,475,086	-		PFLU_RS29115	0.29	+1.0
6,475,086	-		PFLU_RS29115	0.29	+0.4
6,475,086	-		PFLU_RS29115	0.29	-0.8
6,475,086	-		PFLU_RS29115	0.29	-2.1
6,475,086	-		PFLU_RS29115	0.29	+0.5
6,475,086	-		PFLU_RS29115	0.29	-0.3
6,475,086	-		PFLU_RS29115	0.29	-0.1
6,475,086	-		PFLU_RS29115	0.29	-2.7
6,475,086	-		PFLU_RS29115	0.29	+1.2
6,475,086	-		PFLU_RS29115	0.29	+0.2
6,475,086	-		PFLU_RS29115	0.29	+0.7
6,475,086	-		PFLU_RS29115	0.29	-0.0
6,475,330	+		PFLU_RS29115	0.65	+0.7
6,475,330	+		PFLU_RS29115	0.65	+0.9
6,475,330	+		PFLU_RS29115	0.65	-0.6
6,475,331	-		PFLU_RS29115	0.65	+1.6
6,475,429	-		PFLU_RS29115	0.80	+1.2
6,475,429	-		PFLU_RS29115	0.80	+0.3
6,475,429	-		PFLU_RS29115	0.80	-1.4
6,475,471	+		PFLU_RS29115	0.86	-1.1
6,475,471	+		PFLU_RS29115	0.86	+0.6
6,475,471	+		PFLU_RS29115	0.86	+0.2
6,475,471	+		PFLU_RS29115	0.86	-0.1
6,475,471	+		PFLU_RS29115	0.86	-1.8
6,475,471	+		PFLU_RS29115	0.86	+0.7
6,475,471	+		PFLU_RS29115	0.86	-0.9
6,475,471	+		PFLU_RS29115	0.86	-0.2
6,475,471	+		PFLU_RS29115	0.86	-0.4
6,475,471	+		PFLU_RS29115	0.86	-3.3
6,475,471	+		PFLU_RS29115	0.86	-0.7
6,475,471	+		PFLU_RS29115	0.86	+0.0
6,475,471	+		PFLU_RS29115	0.86	+0.8
6,475,471	+		PFLU_RS29115	0.86	-0.6
6,475,471	+		PFLU_RS29115	0.86	+0.9
6,475,471	+		PFLU_RS29115	0.86	+0.8
6,475,471	+		PFLU_RS29115	0.86	+0.2
6,475,471	+		PFLU_RS29115	0.86	+2.9
6,475,471	+		PFLU_RS29115	0.86	+0.1
6,475,471	+		PFLU_RS29115	0.86	-0.8
6,475,471	+		PFLU_RS29115	0.86	-0.9
6,475,472	-		PFLU_RS29115	0.87	+0.3
6,475,472	-		PFLU_RS29115	0.87	-0.7
6,475,472	-		PFLU_RS29115	0.87	-1.1
6,475,472	-		PFLU_RS29115	0.87	+0.8
6,475,472	-		PFLU_RS29115	0.87	+0.8
6,475,472	-		PFLU_RS29115	0.87	-2.8
6,475,472	-		PFLU_RS29115	0.87	-1.1
6,475,472	-		PFLU_RS29115	0.87	-1.0
6,475,472	-		PFLU_RS29115	0.87	-0.1
6,475,472	-		PFLU_RS29115	0.87	-0.3
6,475,472	-		PFLU_RS29115	0.87	-0.3
6,475,472	-		PFLU_RS29115	0.87	-0.6
6,475,472	-		PFLU_RS29115	0.87	+1.3
6,475,472	-		PFLU_RS29115	0.87	-2.1
6,475,472	-		PFLU_RS29115	0.87	+1.1
6,475,472	-		PFLU_RS29115	0.87	+3.0
6,475,473	+		PFLU_RS29115	0.87	-0.3
6,475,473	+		PFLU_RS29115	0.87	-0.2
6,475,473	+		PFLU_RS29115	0.87	+1.1
6,475,473	+		PFLU_RS29115	0.87	-1.1
6,475,473	+		PFLU_RS29115	0.87	-1.8
6,475,473	+		PFLU_RS29115	0.87	-0.1
6,475,473	+		PFLU_RS29115	0.87	-0.4
6,475,474	-		PFLU_RS29115	0.87	-1.2
6,475,474	-		PFLU_RS29115	0.87	+1.7
6,475,474	-		PFLU_RS29115	0.87	+0.3
6,475,474	-		PFLU_RS29115	0.87	+2.4
6,475,474	-		PFLU_RS29115	0.87	+2.2
6,475,561	+				+1.8
6,475,561	+				-1.0
6,475,561	+				+2.2
6,475,562	-				+0.7
6,475,562	-				+0.7
6,475,562	-				-0.9
6,475,562	-				+0.7
6,475,569	+				+0.6
6,475,569	+				-0.5
6,475,569	+				+1.0
6,475,569	+				+0.2
6,475,569	+				-0.9
6,475,569	+				+1.2
6,475,570	-				-1.4
6,475,570	-				+0.0
6,475,570	-				+0.4
6,475,570	-				+1.1
6,475,570	-				-1.3
6,475,570	-				+0.2
6,475,570	-				+0.2
6,475,570	-				+1.6
6,475,570	-				-0.5
6,475,570	-				+0.2
6,475,570	-				+2.4
6,475,570	-				+0.7
6,475,651	+				+0.6
6,475,651	+				-0.3
6,475,651	+				+0.3
6,475,651	+				-0.5
6,475,652	-				-0.1
6,475,652	-				+0.7
6,475,652	-				+1.4
6,475,652	-				-2.1
6,475,754	+				+0.7
6,475,754	+				-1.0
6,475,774	+				-2.5
6,475,774	+				-1.3
6,475,775	-				+0.8
6,475,775	-				-0.9
6,475,775	-				+0.9
6,475,775	-				-0.3
6,475,775	-				-0.1
6,475,918	+				-1.6
6,475,919	-				+3.0
6,475,949	-				+0.9
6,476,210	+		PFLU_RS29120	0.61	-1.2
6,476,210	+		PFLU_RS29120	0.61	-1.5
6,476,211	-		PFLU_RS29120	0.61	-0.4
6,476,211	-		PFLU_RS29120	0.61	-3.0
6,476,211	-		PFLU_RS29120	0.61	-1.8
6,476,274	+		PFLU_RS29120	0.75	-1.2
6,476,275	-		PFLU_RS29120	0.75	-1.7
6,476,275	-		PFLU_RS29120	0.75	+0.1
6,476,275	-		PFLU_RS29120	0.75	+0.2
6,476,299	+		PFLU_RS29120	0.80	-2.2
6,476,388	+				-0.2
6,476,388	+				+1.7
6,476,388	+				+0.1
6,476,388	+				-1.2
6,476,388	+				+1.3
6,476,388	+				-0.3
6,476,388	+				-1.0
6,476,388	+				+0.4
6,476,388	+				-0.5
6,476,388	+				-2.0
6,476,388	+				-2.1
6,476,388	+				-1.8
6,476,388	+				+0.2
6,476,388	+				+0.3
6,476,389	-				-0.5
6,476,389	-				-0.9
6,476,389	-				+0.6
6,476,389	-				+0.5
6,476,389	-				-1.1
6,476,389	-				+1.7
6,476,389	-				-0.6
6,476,389	-				+0.5
6,476,389	-				-1.7
6,476,389	-				+0.8
6,476,392	+				-0.6
6,476,392	+				+0.3
6,476,392	+				+0.1
6,476,392	+				+1.4
6,476,392	+				+2.2
6,476,392	+				-0.4
6,476,392	+				-0.4
6,476,392	+				+1.5
6,476,392	+				-0.8
6,476,392	+				+0.2
6,476,392	+				+0.5
6,476,392	+				+0.9
6,476,392	+				+0.3
6,476,393	-				-2.6
6,476,393	-				-1.7
6,476,393	-				+1.1
6,476,393	-				+0.1
6,476,393	-				-0.1
6,476,393	-				+1.3
6,476,393	-				-0.3
6,476,393	-				-1.6
6,476,393	-				-1.5
6,476,393	-				+2.2
6,476,393	-				+0.9
6,476,393	-				-0.3
6,476,393	-				+1.1
6,476,434	+				+1.2
6,476,434	+				-2.3
6,476,434	+				-0.4
6,476,434	+				+0.5
6,476,434	+				+1.2
6,476,434	+				-0.1
6,476,435	-				+0.9
6,476,482	+				+0.7
6,476,482	+				-0.9
6,476,483	-				-0.8