Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS09915

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS
2,185,910	-		PFLU_RS09910	0.32	+0.5
2,185,910	-		PFLU_RS09910	0.32	+0.6
2,185,918	+		PFLU_RS09910	0.32	+0.3
2,185,919	-		PFLU_RS09910	0.32	+2.6
2,185,919	-		PFLU_RS09910	0.32	+0.0
2,185,919	-		PFLU_RS09910	0.32	+1.3
2,185,919	-		PFLU_RS09910	0.32	-1.1
2,185,924	+		PFLU_RS09910	0.33	-0.6
2,185,924	+		PFLU_RS09910	0.33	+1.8
2,185,925	-		PFLU_RS09910	0.33	-0.7
2,185,925	-		PFLU_RS09910	0.33	-1.7
2,185,925	-		PFLU_RS09910	0.33	+1.2
2,185,939	-		PFLU_RS09910	0.34	+0.8
2,185,939	-		PFLU_RS09910	0.34	-2.4
2,185,988	+		PFLU_RS09910	0.38	+1.6
2,185,989	-		PFLU_RS09910	0.38	-1.0
2,186,071	+		PFLU_RS09910	0.44	-0.9
2,186,071	+		PFLU_RS09910	0.44	+0.3
2,186,071	+		PFLU_RS09910	0.44	-0.2
2,186,072	-		PFLU_RS09910	0.44	-1.9
2,186,072	-		PFLU_RS09910	0.44	+1.6
2,186,072	-		PFLU_RS09910	0.44	-2.3
2,186,072	-		PFLU_RS09910	0.44	+0.9
2,186,072	-		PFLU_RS09910	0.44	+0.6
2,186,079	+		PFLU_RS09910	0.45	-0.6
2,186,079	+		PFLU_RS09910	0.45	+0.6
2,186,079	+		PFLU_RS09910	0.45	-1.6
2,186,079	+		PFLU_RS09910	0.45	-1.2
2,186,079	+		PFLU_RS09910	0.45	+1.2
2,186,079	+		PFLU_RS09910	0.45	-0.1
2,186,079	+		PFLU_RS09910	0.45	+1.0
2,186,080	-		PFLU_RS09910	0.45	-0.4
2,186,090	+		PFLU_RS09910	0.46	-0.9
2,186,106	-		PFLU_RS09910	0.47	+0.1
2,186,106	-		PFLU_RS09910	0.47	+0.3
2,186,117	+		PFLU_RS09910	0.48	-1.0
2,186,117	+		PFLU_RS09910	0.48	-1.6
2,186,117	+		PFLU_RS09910	0.48	+1.8
2,186,118	-		PFLU_RS09910	0.48	-1.0
2,186,118	-		PFLU_RS09910	0.48	+0.7
2,186,118	-		PFLU_RS09910	0.48	+1.3
2,186,118	-		PFLU_RS09910	0.48	-2.9
2,186,118	-		PFLU_RS09910	0.48	+1.9
2,186,118	-		PFLU_RS09910	0.48	+0.0
2,186,184	+		PFLU_RS09910	0.53	+2.0
2,186,225	+		PFLU_RS09910	0.56	-0.6
2,186,226	-		PFLU_RS09910	0.56	+2.0
2,186,246	-		PFLU_RS09910	0.58	-1.4
2,186,249	+		PFLU_RS09910	0.58	+0.9
2,186,250	-		PFLU_RS09910	0.58	+0.4
2,186,287	+		PFLU_RS09910	0.61	+2.0
2,186,288	-		PFLU_RS09910	0.61	-2.0
2,186,313	+		PFLU_RS09910	0.63	-0.5
2,186,341	-		PFLU_RS09910	0.65	-1.2
2,186,341	-		PFLU_RS09910	0.65	-1.8
2,186,374	+		PFLU_RS09910	0.67	-2.5
2,186,374	+		PFLU_RS09910	0.67	+0.3
2,186,375	-		PFLU_RS09910	0.68	-0.1
2,186,410	-		PFLU_RS09910	0.70	-0.7
2,186,462	+		PFLU_RS09910	0.74	-2.0
2,186,465	+		PFLU_RS09910	0.74	-0.6
2,186,494	+		PFLU_RS09910	0.77	+2.3
2,186,494	+		PFLU_RS09910	0.77	+1.2
2,186,495	-		PFLU_RS09910	0.77	+1.6
2,186,499	-		PFLU_RS09910	0.77	+0.7
2,186,499	-		PFLU_RS09910	0.77	-0.7
2,186,499	-		PFLU_RS09910	0.77	-1.7
2,186,554	+		PFLU_RS09910	0.81	+1.1
2,186,554	+		PFLU_RS09910	0.81	+1.3
2,186,555	-		PFLU_RS09910	0.81	+0.9
2,186,563	+		PFLU_RS09910	0.82	+1.1
2,186,563	+		PFLU_RS09910	0.82	-0.7
2,186,564	-		PFLU_RS09910	0.82	-2.2
2,186,564	-		PFLU_RS09910	0.82	+1.6
2,186,564	-		PFLU_RS09910	0.82	-0.4
2,186,570	+		PFLU_RS09910	0.83	+1.0
2,186,571	-		PFLU_RS09910	0.83	-0.9
2,186,571	-		PFLU_RS09910	0.83	-2.2
2,186,594	-		PFLU_RS09910	0.84	+0.6
2,186,634	+		PFLU_RS09910	0.87	-2.6
2,186,637	+		PFLU_RS09910	0.88	-1.7
2,186,637	+		PFLU_RS09910	0.88	-0.9
2,186,678	+				-0.4
2,186,722	+				-1.2
2,186,722	+				-1.6
2,186,723	-				+1.6
2,186,741	+				-3.4
2,186,741	+				+0.9
2,186,827	+				-0.2
2,186,831	+				+1.8
2,186,831	+				+0.0
2,186,832	-				+0.3
2,186,866	+				+0.4
2,186,867	-				+1.3
2,186,867	-				+1.4
2,186,871	+				-0.9
2,186,872	-				-1.6
2,186,874	-				-1.6
2,186,875	+				-0.7
2,186,876	-				-1.0
2,186,891	+				-0.2
2,186,912	+				+2.2
2,186,912	+				-2.7
2,186,915	+				+0.2
2,186,931	-				-1.4
2,186,942	-				-1.3
2,186,942	-				+0.7
2,186,969	+				+2.2
2,186,969	+				-0.1
2,186,969	+				+1.6
2,186,970	-				+0.2
2,186,984	+				-1.2
2,186,984	+				+0.6
2,186,984	+				+0.4
2,186,985	-				+0.1
2,187,067	+		PFLU_RS09915	0.10	-3.0
2,187,067	+		PFLU_RS09915	0.10	+0.7
2,187,067	+		PFLU_RS09915	0.10	-2.1
2,187,067	+		PFLU_RS09915	0.10	+0.0
2,187,068	-		PFLU_RS09915	0.10	-1.0
2,187,068	-		PFLU_RS09915	0.10	-0.3
2,187,068	-		PFLU_RS09915	0.10	-0.9
2,187,068	-		PFLU_RS09915	0.10	-0.1
2,187,071	+		PFLU_RS09915	0.11	+2.0
2,187,071	+		PFLU_RS09915	0.11	-3.5
2,187,072	-		PFLU_RS09915	0.11	-1.0
2,187,072	-		PFLU_RS09915	0.11	-0.4
2,187,121	+		PFLU_RS09915	0.14	+0.1
2,187,122	-		PFLU_RS09915	0.14	+0.4
2,187,122	-		PFLU_RS09915	0.14	-1.0
2,187,122	-		PFLU_RS09915	0.14	-0.4
2,187,124	+		PFLU_RS09915	0.14	+2.0
2,187,238	-		PFLU_RS09915	0.21	-0.1
2,187,241	+		PFLU_RS09915	0.22	+0.0
2,187,241	+		PFLU_RS09915	0.22	-0.2
2,187,241	+		PFLU_RS09915	0.22	-0.6
2,187,242	-		PFLU_RS09915	0.22	+2.6
2,187,316	+		PFLU_RS09915	0.26	+0.7
2,187,316	+		PFLU_RS09915	0.26	+1.3
2,187,316	+		PFLU_RS09915	0.26	+0.0
2,187,316	+		PFLU_RS09915	0.26	+1.6
2,187,317	-		PFLU_RS09915	0.27	-3.2
2,187,317	-		PFLU_RS09915	0.27	+1.6
2,187,317	-		PFLU_RS09915	0.27	+1.2
2,187,317	-		PFLU_RS09915	0.27	+1.3
2,187,317	-		PFLU_RS09915	0.27	-2.6
2,187,329	+		PFLU_RS09915	0.27	-0.4
2,187,329	+		PFLU_RS09915	0.27	+2.8
2,187,330	-		PFLU_RS09915	0.27	-0.7
2,187,330	-		PFLU_RS09915	0.27	-0.4
2,187,330	-		PFLU_RS09915	0.27	+1.8
2,187,349	+		PFLU_RS09915	0.29	+1.2
2,187,350	-		PFLU_RS09915	0.29	+1.2
2,187,350	-		PFLU_RS09915	0.29	+0.7
2,187,350	-		PFLU_RS09915	0.29	+2.4
2,187,350	-		PFLU_RS09915	0.29	+1.3
2,187,417	+		PFLU_RS09915	0.33	-1.8
2,187,417	+		PFLU_RS09915	0.33	-0.4
2,187,417	+		PFLU_RS09915	0.33	+0.0
2,187,418	-		PFLU_RS09915	0.33	-1.9
2,187,418	-		PFLU_RS09915	0.33	+1.1
2,187,418	-		PFLU_RS09915	0.33	-1.6
2,187,418	-		PFLU_RS09915	0.33	-1.7
2,187,536	+		PFLU_RS09915	0.41	-2.7
2,187,536	+		PFLU_RS09915	0.41	+0.0
2,187,536	+		PFLU_RS09915	0.41	-0.2
2,187,536	+		PFLU_RS09915	0.41	-1.0
2,187,536	+		PFLU_RS09915	0.41	-0.9
2,187,536	+		PFLU_RS09915	0.41	+0.7
2,187,536	+		PFLU_RS09915	0.41	-0.4
2,187,537	-		PFLU_RS09915	0.41	-0.7
2,187,537	-		PFLU_RS09915	0.41	+0.3
2,187,539	+		PFLU_RS09915	0.41	+0.5
2,187,539	+		PFLU_RS09915	0.41	-2.3
2,187,539	+		PFLU_RS09915	0.41	-1.2
2,187,539	+		PFLU_RS09915	0.41	+0.3
2,187,539	+		PFLU_RS09915	0.41	+0.9
2,187,540	-		PFLU_RS09915	0.41	-1.9
2,187,540	-		PFLU_RS09915	0.41	+1.3
2,187,540	-		PFLU_RS09915	0.41	-0.6
2,187,540	-		PFLU_RS09915	0.41	+1.3
2,187,540	-		PFLU_RS09915	0.41	+0.8
2,187,540	-		PFLU_RS09915	0.41	+0.1
2,187,540	-		PFLU_RS09915	0.41	+0.3
2,187,540	-		PFLU_RS09915	0.41	-2.4
2,187,540	-		PFLU_RS09915	0.41	-1.9
2,187,569	+		PFLU_RS09915	0.43	-0.3
2,187,569	+		PFLU_RS09915	0.43	-2.1
2,187,569	+		PFLU_RS09915	0.43	-0.2
2,187,569	+		PFLU_RS09915	0.43	-1.2
2,187,570	-		PFLU_RS09915	0.43	-3.2
2,187,570	-		PFLU_RS09915	0.43	-0.7
2,187,570	-		PFLU_RS09915	0.43	-0.6
2,187,570	-		PFLU_RS09915	0.43	+1.2
2,187,570	-		PFLU_RS09915	0.43	+1.6
2,187,573	+		PFLU_RS09915	0.43	-0.7
2,187,573	+		PFLU_RS09915	0.43	-1.0
2,187,574	-		PFLU_RS09915	0.43	+0.6
2,187,574	-		PFLU_RS09915	0.43	-2.7
2,187,574	-		PFLU_RS09915	0.43	+0.0
2,187,591	+		PFLU_RS09915	0.44	+0.1
2,187,591	+		PFLU_RS09915	0.44	+1.6
2,187,591	+		PFLU_RS09915	0.44	-1.9
2,187,591	+		PFLU_RS09915	0.44	+2.2
2,187,591	+		PFLU_RS09915	0.44	-2.5
2,187,591	+		PFLU_RS09915	0.44	+1.6
2,187,591	+		PFLU_RS09915	0.44	-0.4
2,187,592	-		PFLU_RS09915	0.44	+0.9
2,187,592	-		PFLU_RS09915	0.44	+0.4
2,187,592	-		PFLU_RS09915	0.44	+1.1
2,187,592	-		PFLU_RS09915	0.44	+1.4
2,187,592	-		PFLU_RS09915	0.44	-1.3
2,187,592	-		PFLU_RS09915	0.44	-0.7
2,187,592	-		PFLU_RS09915	0.44	+1.4
2,187,592	-		PFLU_RS09915	0.44	-0.2
2,187,592	-		PFLU_RS09915	0.44	+0.3
2,187,592	-		PFLU_RS09915	0.44	-2.6
2,187,678	+		PFLU_RS09915	0.50	-1.2
2,187,679	-		PFLU_RS09915	0.50	-0.4
2,187,683	+		PFLU_RS09915	0.50	+0.8
2,187,714	+		PFLU_RS09915	0.52	-0.8
2,187,714	+		PFLU_RS09915	0.52	+0.2
2,187,714	+		PFLU_RS09915	0.52	+2.6
2,187,714	+		PFLU_RS09915	0.52	-0.8
2,187,714	+		PFLU_RS09915	0.52	+1.3
2,187,714	+		PFLU_RS09915	0.52	+1.0
2,187,714	+		PFLU_RS09915	0.52	-1.4
2,187,715	-		PFLU_RS09915	0.52	+0.2
2,187,715	-		PFLU_RS09915	0.52	+0.3
2,187,715	-		PFLU_RS09915	0.52	-1.1
2,187,715	-		PFLU_RS09915	0.52	+1.6
2,187,715	-		PFLU_RS09915	0.52	+1.6
2,187,715	-		PFLU_RS09915	0.52	+0.9
2,187,715	-		PFLU_RS09915	0.52	-0.5
2,187,715	-		PFLU_RS09915	0.52	-0.4
2,187,715	-		PFLU_RS09915	0.52	-1.4
2,187,715	-		PFLU_RS09915	0.52	+1.3
2,187,788	+		PFLU_RS09915	0.57	+0.2
2,187,789	-		PFLU_RS09915	0.57	-0.9
2,187,789	-		PFLU_RS09915	0.57	+0.2
2,187,794	+		PFLU_RS09915	0.57	+0.3
2,187,794	+		PFLU_RS09915	0.57	+0.3
2,187,795	-		PFLU_RS09915	0.57	+0.6
2,187,795	-		PFLU_RS09915	0.57	+2.2
2,187,795	-		PFLU_RS09915	0.57	-1.4
2,187,876	-		PFLU_RS09915	0.63	-2.0
2,187,876	-		PFLU_RS09915	0.63	+2.2
2,187,876	-		PFLU_RS09915	0.63	-2.6
2,187,876	-		PFLU_RS09915	0.63	+0.4
2,187,876	-		PFLU_RS09915	0.63	-1.0
2,187,902	-		PFLU_RS09915	0.64	-1.1
2,187,902	-		PFLU_RS09915	0.64	-0.7
2,187,939	+		PFLU_RS09915	0.67	-2.3
2,187,939	+		PFLU_RS09915	0.67	+1.4
2,187,939	+		PFLU_RS09915	0.67	-1.0
2,187,939	+		PFLU_RS09915	0.67	+0.0
2,187,939	+		PFLU_RS09915	0.67	+0.0
2,187,939	+		PFLU_RS09915	0.67	-0.7
2,187,939	+		PFLU_RS09915	0.67	-1.8
2,187,939	+		PFLU_RS09915	0.67	+0.6
2,187,939	+		PFLU_RS09915	0.67	-1.7
2,187,939	+		PFLU_RS09915	0.67	+0.2
2,187,939	+		PFLU_RS09915	0.67	+1.8
2,187,940	-		PFLU_RS09915	0.67	-1.4
2,187,940	-		PFLU_RS09915	0.67	+0.7
2,187,940	-		PFLU_RS09915	0.67	-0.9
2,188,060	+		PFLU_RS09915	0.75	+0.4
2,188,061	-		PFLU_RS09915	0.75	+1.2
2,188,123	+		PFLU_RS09915	0.79	-0.3
2,188,123	+		PFLU_RS09915	0.79	-1.3
2,188,123	+		PFLU_RS09915	0.79	+1.6
2,188,124	-		PFLU_RS09915	0.79	+0.7
2,188,165	+		PFLU_RS09915	0.81	-1.0
2,188,166	-		PFLU_RS09915	0.81	+2.0
2,188,175	+		PFLU_RS09915	0.82	+0.7
2,188,175	+		PFLU_RS09915	0.82	-1.2
2,188,175	+		PFLU_RS09915	0.82	-1.7
2,188,175	+		PFLU_RS09915	0.82	-0.5
2,188,176	-		PFLU_RS09915	0.82	+0.8
2,188,207	-		PFLU_RS09915	0.84	-0.6
2,188,303	+				-0.4
2,188,306	+				+0.4
2,188,306	+				+0.5
2,188,306	+				+1.3
2,188,307	-				-1.3
2,188,412	+				-2.3
2,188,412	+				+0.2
2,188,412	+				-0.7
2,188,412	+				-1.4
2,188,412	+				-0.7
2,188,412	+				-1.4
2,188,412	+				+0.1
2,188,413	-				+1.2
2,188,413	-				-0.1
2,188,413	-				+1.8
2,188,413	-				-0.9
2,188,413	-				+0.6
2,188,413	-				-0.9
2,188,413	-				+1.1
2,188,413	-				-0.2
2,188,413	-				+1.4
2,188,415	+				+0.1
2,188,415	+				+1.3
2,188,416	-				+1.5
2,188,416	-				-2.1
2,188,416	-				+1.1
2,188,528	+				+0.2
2,188,529	-				+0.0
2,188,529	-				+0.3
2,188,529	-				+0.6
2,188,620	+				-0.2
2,188,621	-				-0.5
2,188,621	-				+0.6
2,188,629	+				+1.0
2,188,630	-				+0.6
2,188,647	-				+1.9
2,188,701	-				+1.4
2,188,730	+				-1.8
2,188,730	+				-0.5
2,188,730	+				-2.1
2,188,730	+				+0.6
2,188,731	-				-2.0
2,188,731	-				-0.6
2,188,731	-				+1.2
2,188,731	-				-1.6
2,188,731	-				+1.3
2,188,731	-				+0.2
2,188,731	-				-1.9
2,188,899	-		PFLU_RS30615	0.79	+1.3
2,188,899	-		PFLU_RS30615	0.79	+1.0
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2,188,906	+		PFLU_RS30615	0.82	-0.1
2,188,907	-		PFLU_RS30615	0.83	+0.6
2,188,907	-		PFLU_RS30615	0.83	-1.9
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