Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35345
Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X |
---|---|---|---|---|---|
remove | |||||
3,527,697 | + | +0.7 | |||
3,527,833 | + | +0.1 | |||
3,527,845 | + | +0.4 | |||
3,527,846 | - | +0.9 | |||
3,528,015 | + | BPHYT_RS35340 | 0.30 | +0.3 | |
3,528,066 | + | BPHYT_RS35340 | 0.39 | +1.0 | |
3,528,236 | - | BPHYT_RS35340 | 0.68 | +1.1 | |
3,528,361 | - | BPHYT_RS35340 | 0.89 | +0.4 | |
3,528,604 | + | BPHYT_RS35345 | 0.13 | +0.4 | |
3,529,399 | - | BPHYT_RS35345 | 0.70 | +0.2 | |
3,529,536 | + | BPHYT_RS35345 | 0.80 | +0.1 | |
3,529,589 | - | BPHYT_RS35345 | 0.84 | -1.0 | |
3,529,727 | - | +1.1 | |||
3,529,817 | - | -0.4 | |||
3,530,536 | - | BPHYT_RS35350 | 0.69 | -1.8 | |
3,530,599 | - | BPHYT_RS35350 | 0.76 | +0.0 | |
3,530,709 | + | BPHYT_RS35350 | 0.88 | +0.4 | |
3,530,709 | + | BPHYT_RS35350 | 0.88 | -0.5 | |
3,530,709 | + | BPHYT_RS35350 | 0.88 | +0.3 |
Or see this region's nucleotide sequence