Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33855

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS33845 and BPHYT_RS33850 are separated by 7 nucleotidesBPHYT_RS33850 and BPHYT_RS33855 are separated by 29 nucleotidesBPHYT_RS33855 and BPHYT_RS33860 are separated by 396 nucleotides BPHYT_RS33845: BPHYT_RS33845 - bacteriocin production protein, at 3,185,583 to 3,186,077 _RS33845 BPHYT_RS33850: BPHYT_RS33850 - sporulation protein, at 3,186,085 to 3,187,008 _RS33850 BPHYT_RS33855: BPHYT_RS33855 - folylpolyglutamate synthase, at 3,187,038 to 3,188,348 _RS33855 BPHYT_RS33860: BPHYT_RS33860 - acetyl-CoA carboxylase carboxyl transferase subunit beta, at 3,188,745 to 3,189,617 _RS33860 Position (kb) 3187 3188 3189Strain fitness (log2 ratio) -1 0 1at 3186.051 kb on + strandat 3186.052 kb on - strandat 3186.087 kb on - strandat 3186.574 kb on - strand, within BPHYT_RS33850at 3186.574 kb on - strand, within BPHYT_RS33850at 3187.056 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
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3,186,051 + -0.1
3,186,052 - -0.9
3,186,087 - -0.3
3,186,574 - BPHYT_RS33850 0.53 -0.2
3,186,574 - BPHYT_RS33850 0.53 +0.2
3,187,056 - +1.1

Or see this region's nucleotide sequence