Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33600

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
3,121,628	+				-0.3
3,121,628	+				-0.2
3,121,629	-				-0.7
3,121,629	-				+0.2
3,121,746	-		BPHYT_RS33595	0.15	-0.6
3,121,775	+		BPHYT_RS33595	0.19	-0.1
3,121,907	+		BPHYT_RS33595	0.34	+0.0
3,121,928	+		BPHYT_RS33595	0.36	+0.8
3,121,928	+		BPHYT_RS33595	0.36	-0.1
3,121,928	+		BPHYT_RS33595	0.36	+0.6
3,121,929	-		BPHYT_RS33595	0.36	-0.1
3,122,278	+		BPHYT_RS33595	0.76	-0.4
3,122,278	+		BPHYT_RS33595	0.76	+0.0
3,122,278	+		BPHYT_RS33595	0.76	-0.1
3,122,278	+		BPHYT_RS33595	0.76	+0.1
3,122,278	+		BPHYT_RS33595	0.76	-0.0
3,122,278	+		BPHYT_RS33595	0.76	+0.7
3,122,279	-		BPHYT_RS33595	0.77	-1.7
3,122,720	-		BPHYT_RS33600	0.14	-0.2
3,122,822	-		BPHYT_RS33600	0.26	+0.9
3,122,822	-		BPHYT_RS33600	0.26	+0.5
3,122,824	-		BPHYT_RS33600	0.26	-1.3
3,122,911	+		BPHYT_RS33600	0.36	-1.3
3,123,116	+		BPHYT_RS33600	0.59	+2.2
3,123,145	+		BPHYT_RS33600	0.62	-0.4
3,123,169	+		BPHYT_RS33600	0.65	+0.6
3,123,206	+		BPHYT_RS33600	0.69	-0.8
3,123,283	+		BPHYT_RS33600	0.78	-0.7
3,123,318	+		BPHYT_RS33600	0.82	-1.4
3,123,350	+		BPHYT_RS33600	0.86	-0.0
3,123,422	+				-0.4
3,123,673	+				+0.4
3,123,685	+				-0.1
3,123,685	+				+0.1
3,123,686	-				+0.0
3,123,686	-				-2.9
3,123,686	-				+0.1
3,123,686	-				-0.0
3,123,686	-				-0.8
3,123,800	-		BPHYT_RS33605	0.17	+0.0
3,123,803	+		BPHYT_RS33605	0.17	+0.5
3,124,286	-		BPHYT_RS33605	0.53	-1.1
3,124,286	-		BPHYT_RS33605	0.53	-1.2