Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32985

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
2,978,335	-		BPHYT_RS32980	0.79	-0.9
2,978,352	+		BPHYT_RS32980	0.80	+0.1
2,978,440	-		BPHYT_RS32980	0.85	+0.1
2,978,706	+				+0.3
2,978,904	-				+0.5
2,979,028	+				-0.3
2,979,029	-				-0.5
2,979,029	-				-0.1
2,979,104	-				+1.3
2,979,119	+				-0.3
2,979,120	-				+1.7
2,979,203	-				+1.6
2,979,384	+		BPHYT_RS32985	0.28	+0.3
2,979,453	-		BPHYT_RS32985	0.36	-0.1
2,979,508	+		BPHYT_RS32985	0.42	+0.4
2,979,806	+		BPHYT_RS32985	0.74	+1.4
2,979,968	-				-1.3
2,980,072	+				+1.5
2,980,073	-				-0.5
2,980,209	+				-1.1
2,980,209	+				+0.8
2,980,286	+				-0.3
2,980,329	+				+0.1
2,980,405	-				+0.1
2,980,445	-				-0.7
2,980,491	+		BPHYT_RS32990	0.10	-1.3
2,980,492	-		BPHYT_RS32990	0.10	-0.3
2,980,593	+		BPHYT_RS32990	0.17	-0.3
2,980,650	+		BPHYT_RS32990	0.21	+0.1
2,980,651	-		BPHYT_RS32990	0.21	+0.7
2,980,704	+		BPHYT_RS32990	0.24	+2.4
2,980,734	-		BPHYT_RS32990	0.26	+0.4
2,980,894	-		BPHYT_RS32990	0.37	-0.3