Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26685

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26680 and BPHYT_RS26685 overlap by 8 nucleotidesBPHYT_RS26685 and BPHYT_RS26690 are separated by 0 nucleotidesBPHYT_RS26690 and BPHYT_RS26695 overlap by 13 nucleotides BPHYT_RS26680: BPHYT_RS26680 - oxidoreductase, at 1,554,444 to 1,555,886 _RS26680 BPHYT_RS26685: BPHYT_RS26685 - precorrin-8X methylmutase, at 1,555,879 to 1,556,505 _RS26685 BPHYT_RS26690: BPHYT_RS26690 - precorrin-2 C20-methyltransferase, at 1,556,506 to 1,557,237 _RS26690 BPHYT_RS26695: BPHYT_RS26695 - cobalamin biosynthesis protein CbiG, at 1,557,225 to 1,558,937 _RS26695 Position (kb) 1555 1556 1557Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1555.034 kb on + strand, within BPHYT_RS26680at 1555.035 kb on - strand, within BPHYT_RS26680at 1555.059 kb on - strand, within BPHYT_RS26680at 1555.147 kb on + strand, within BPHYT_RS26680at 1555.147 kb on + strand, within BPHYT_RS26680at 1555.240 kb on + strand, within BPHYT_RS26680at 1555.889 kb on - strandat 1555.913 kb on - strandat 1556.172 kb on + strand, within BPHYT_RS26685at 1556.313 kb on + strand, within BPHYT_RS26685at 1556.611 kb on + strand, within BPHYT_RS26690at 1556.854 kb on + strand, within BPHYT_RS26690at 1556.855 kb on - strand, within BPHYT_RS26690at 1556.860 kb on + strand, within BPHYT_RS26690at 1556.860 kb on + strand, within BPHYT_RS26690at 1556.860 kb on + strand, within BPHYT_RS26690

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
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1,555,034 + BPHYT_RS26680 0.41 -3.5
1,555,035 - BPHYT_RS26680 0.41 -1.0
1,555,059 - BPHYT_RS26680 0.43 -0.6
1,555,147 + BPHYT_RS26680 0.49 -0.8
1,555,147 + BPHYT_RS26680 0.49 -0.4
1,555,240 + BPHYT_RS26680 0.55 -0.0
1,555,889 - -1.2
1,555,913 - +0.5
1,556,172 + BPHYT_RS26685 0.47 -2.1
1,556,313 + BPHYT_RS26685 0.69 +0.1
1,556,611 + BPHYT_RS26690 0.14 -0.2
1,556,854 + BPHYT_RS26690 0.48 -0.3
1,556,855 - BPHYT_RS26690 0.48 -0.9
1,556,860 + BPHYT_RS26690 0.48 +2.4
1,556,860 + BPHYT_RS26690 0.48 +0.5
1,556,860 + BPHYT_RS26690 0.48 +0.4

Or see this region's nucleotide sequence