Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25105 and BPHYT_RS25110 are separated by 28 nucleotides BPHYT_RS25110 and BPHYT_RS25115 overlap by 4 nucleotides BPHYT_RS25115 and BPHYT_RS25120 overlap by 11 nucleotides BPHYT_RS25120 and BPHYT_RS25125 are separated by 57 nucleotides
BPHYT_RS25105: BPHYT_RS25105 - sarcosine oxidase subunit beta, at 1,205,073 to 1,206,317
_RS25105
BPHYT_RS25110: BPHYT_RS25110 - sarcosine oxidase subunit delta, at 1,206,346 to 1,206,684
_RS25110
BPHYT_RS25115: BPHYT_RS25115 - sarcosine oxidase subunit alpha, at 1,206,681 to 1,209,683
_RS25115
BPHYT_RS25120: BPHYT_RS25120 - sarcosine oxidase subunit gamma, at 1,209,673 to 1,210,329
_RS25120
BPHYT_RS25125: BPHYT_RS25125 - hypothetical protein, at 1,210,387 to 1,210,650
_RS25125
Position (kb) 1206
1207
1208
1209
1210 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1205.914 kb on - strand, within BPHYT_RS25105 at 1205.915 kb on + strand, within BPHYT_RS25105 at 1206.572 kb on - strand, within BPHYT_RS25110 at 1206.955 kb on - strand at 1207.056 kb on + strand, within BPHYT_RS25115 at 1207.057 kb on - strand, within BPHYT_RS25115 at 1207.060 kb on - strand, within BPHYT_RS25115 at 1207.149 kb on - strand, within BPHYT_RS25115 at 1207.617 kb on + strand, within BPHYT_RS25115 at 1207.630 kb on - strand, within BPHYT_RS25115 at 1207.670 kb on + strand, within BPHYT_RS25115 at 1207.867 kb on - strand, within BPHYT_RS25115 at 1208.325 kb on + strand, within BPHYT_RS25115 at 1208.327 kb on + strand, within BPHYT_RS25115 at 1208.449 kb on - strand, within BPHYT_RS25115 at 1208.850 kb on + strand, within BPHYT_RS25115 at 1209.133 kb on - strand, within BPHYT_RS25115 at 1209.216 kb on + strand, within BPHYT_RS25115 at 1209.392 kb on + strand at 1210.282 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 1,205,914 - BPHYT_RS25105 0.68 +0.2 1,205,915 + BPHYT_RS25105 0.68 -0.1 1,206,572 - BPHYT_RS25110 0.67 +0.8 1,206,955 - +0.2 1,207,056 + BPHYT_RS25115 0.12 +1.1 1,207,057 - BPHYT_RS25115 0.13 +0.6 1,207,060 - BPHYT_RS25115 0.13 +2.1 1,207,149 - BPHYT_RS25115 0.16 +0.6 1,207,617 + BPHYT_RS25115 0.31 +0.4 1,207,630 - BPHYT_RS25115 0.32 +0.4 1,207,670 + BPHYT_RS25115 0.33 +0.7 1,207,867 - BPHYT_RS25115 0.39 -1.8 1,208,325 + BPHYT_RS25115 0.55 +0.4 1,208,327 + BPHYT_RS25115 0.55 +0.6 1,208,449 - BPHYT_RS25115 0.59 -0.3 1,208,850 + BPHYT_RS25115 0.72 -0.4 1,209,133 - BPHYT_RS25115 0.82 +1.1 1,209,216 + BPHYT_RS25115 0.84 -2.4 1,209,392 + +0.1 1,210,282 + +0.0
Or see this region's nucleotide sequence