Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24090

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24080 and BPHYT_RS24085 are separated by 357 nucleotidesBPHYT_RS24085 and BPHYT_RS24090 overlap by 26 nucleotidesBPHYT_RS24090 and BPHYT_RS24095 are separated by 39 nucleotides BPHYT_RS24080: BPHYT_RS24080 - LuxR family transcriptional regulator, at 970,057 to 970,830 _RS24080 BPHYT_RS24085: BPHYT_RS24085 - hypothetical protein, at 971,188 to 971,400 _RS24085 BPHYT_RS24090: BPHYT_RS24090 - ubiquinol oxidase subunit II, cyanide insensitive, at 971,375 to 972,379 _RS24090 BPHYT_RS24095: BPHYT_RS24095 - membrane protein, at 972,419 to 973,831 _RS24095 Position (kb) 971 972 973Strain fitness (log2 ratio) -3 -2 -1 0 1at 970.878 kb on - strandat 971.877 kb on + strand, within BPHYT_RS24090at 972.327 kb on + strandat 972.328 kb on - strandat 972.400 kb on - strandat 973.271 kb on - strand, within BPHYT_RS24095

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
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970,878 - -0.4
971,877 + BPHYT_RS24090 0.50 -3.4
972,327 + -1.6
972,328 - -2.9
972,400 - +0.2
973,271 - BPHYT_RS24095 0.60 -1.2

Or see this region's nucleotide sequence