Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22420

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22415 and BPHYT_RS22420 are separated by 328 nucleotidesBPHYT_RS22420 and BPHYT_RS22425 are separated by 32 nucleotides BPHYT_RS22415: BPHYT_RS22415 - nitrite reductase, at 582,910 to 584,700 _RS22415 BPHYT_RS22420: BPHYT_RS22420 - membrane protein, at 585,029 to 585,217 _RS22420 BPHYT_RS22425: BPHYT_RS22425 - GntR family transcriptional regulator, at 585,250 to 586,665 _RS22425 Position (kb) 585 586Strain fitness (log2 ratio) -2 -1 0 1at 584.468 kb on + strand, within BPHYT_RS22415at 584.469 kb on - strand, within BPHYT_RS22415at 584.690 kb on + strandat 584.690 kb on + strandat 585.148 kb on - strand, within BPHYT_RS22420at 585.339 kb on + strandat 585.465 kb on - strand, within BPHYT_RS22425at 585.465 kb on - strand, within BPHYT_RS22425at 585.507 kb on - strand, within BPHYT_RS22425at 585.507 kb on - strand, within BPHYT_RS22425at 585.582 kb on - strand, within BPHYT_RS22425at 585.942 kb on + strand, within BPHYT_RS22425at 586.188 kb on - strand, within BPHYT_RS22425at 586.198 kb on + strand, within BPHYT_RS22425

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
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584,468 + BPHYT_RS22415 0.87 -0.3
584,469 - BPHYT_RS22415 0.87 -1.3
584,690 + -2.0
584,690 + -1.1
585,148 - BPHYT_RS22420 0.63 +0.1
585,339 + -2.1
585,465 - BPHYT_RS22425 0.15 -1.9
585,465 - BPHYT_RS22425 0.15 -2.6
585,507 - BPHYT_RS22425 0.18 -1.5
585,507 - BPHYT_RS22425 0.18 -1.9
585,582 - BPHYT_RS22425 0.23 -1.5
585,942 + BPHYT_RS22425 0.49 +0.1
586,188 - BPHYT_RS22425 0.66 -1.5
586,198 + BPHYT_RS22425 0.67 -0.5

Or see this region's nucleotide sequence