Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22400 and BPHYT_RS22405 are separated by 57 nucleotides BPHYT_RS22405 and BPHYT_RS22410 are separated by 70 nucleotides BPHYT_RS22410 and BPHYT_RS22415 overlap by 4 nucleotides BPHYT_RS22415 and BPHYT_RS22420 are separated by 328 nucleotides BPHYT_RS22420 and BPHYT_RS22425 are separated by 32 nucleotides
BPHYT_RS22400: BPHYT_RS22400 - hypothetical protein, at 581,632 to 581,958
_RS22400
BPHYT_RS22405: BPHYT_RS22405 - HxlR family transcriptional regulator, at 582,016 to 582,417
_RS22405
BPHYT_RS22410: BPHYT_RS22410 - hypothetical protein, at 582,488 to 582,913
_RS22410
BPHYT_RS22415: BPHYT_RS22415 - nitrite reductase, at 582,910 to 584,700
_RS22415
BPHYT_RS22420: BPHYT_RS22420 - membrane protein, at 585,029 to 585,217
_RS22420
BPHYT_RS22425: BPHYT_RS22425 - GntR family transcriptional regulator, at 585,250 to 586,665
_RS22425
Position (kb) 582
583
584
585 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 581.926 kb on + strand at 581.944 kb on - strand at 581.975 kb on + strand at 581.975 kb on + strand at 581.976 kb on - strand at 581.979 kb on - strand at 582.006 kb on - strand at 582.017 kb on + strand at 582.417 kb on + strand at 582.538 kb on + strand, within BPHYT_RS22410 at 582.539 kb on - strand, within BPHYT_RS22410 at 582.539 kb on - strand, within BPHYT_RS22410 at 582.552 kb on + strand, within BPHYT_RS22410 at 582.721 kb on - strand, within BPHYT_RS22410 at 582.733 kb on - strand, within BPHYT_RS22410 at 583.038 kb on - strand at 583.249 kb on - strand, within BPHYT_RS22415 at 583.296 kb on - strand, within BPHYT_RS22415 at 583.848 kb on - strand, within BPHYT_RS22415 at 583.892 kb on + strand, within BPHYT_RS22415 at 583.893 kb on - strand, within BPHYT_RS22415 at 583.897 kb on - strand, within BPHYT_RS22415 at 583.923 kb on - strand, within BPHYT_RS22415 at 583.946 kb on + strand, within BPHYT_RS22415 at 584.468 kb on + strand, within BPHYT_RS22415 at 584.469 kb on - strand, within BPHYT_RS22415 at 584.690 kb on + strand at 584.690 kb on + strand at 585.148 kb on - strand, within BPHYT_RS22420 at 585.339 kb on + strand at 585.465 kb on - strand, within BPHYT_RS22425 at 585.465 kb on - strand, within BPHYT_RS22425 at 585.507 kb on - strand, within BPHYT_RS22425 at 585.507 kb on - strand, within BPHYT_RS22425 at 585.582 kb on - strand, within BPHYT_RS22425
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 581,926 + +0.2 581,944 - -0.1 581,975 + +0.1 581,975 + -0.4 581,976 - -1.3 581,979 - +0.7 582,006 - -2.4 582,017 + +0.1 582,417 + -0.4 582,538 + BPHYT_RS22410 0.12 -1.3 582,539 - BPHYT_RS22410 0.12 -1.2 582,539 - BPHYT_RS22410 0.12 +0.0 582,552 + BPHYT_RS22410 0.15 -2.2 582,721 - BPHYT_RS22410 0.55 -3.3 582,733 - BPHYT_RS22410 0.58 -1.7 583,038 - -1.8 583,249 - BPHYT_RS22415 0.19 -2.4 583,296 - BPHYT_RS22415 0.22 -2.2 583,848 - BPHYT_RS22415 0.52 -1.4 583,892 + BPHYT_RS22415 0.55 -1.1 583,893 - BPHYT_RS22415 0.55 -2.8 583,897 - BPHYT_RS22415 0.55 -1.7 583,923 - BPHYT_RS22415 0.57 -2.7 583,946 + BPHYT_RS22415 0.58 -1.7 584,468 + BPHYT_RS22415 0.87 -0.3 584,469 - BPHYT_RS22415 0.87 -1.3 584,690 + -2.0 584,690 + -1.1 585,148 - BPHYT_RS22420 0.63 +0.1 585,339 + -2.1 585,465 - BPHYT_RS22425 0.15 -1.9 585,465 - BPHYT_RS22425 0.15 -2.6 585,507 - BPHYT_RS22425 0.18 -1.5 585,507 - BPHYT_RS22425 0.18 -1.9 585,582 - BPHYT_RS22425 0.23 -1.5
Or see this region's nucleotide sequence