Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22060 and BPHYT_RS22065 are separated by 218 nucleotides BPHYT_RS22065 and BPHYT_RS22070 are separated by 514 nucleotides
BPHYT_RS22060: BPHYT_RS22060 - amino acid transporter, at 505,151 to 506,692
_RS22060
BPHYT_RS22065: BPHYT_RS22065 - DNA-binding protein, at 506,911 to 508,383
_RS22065
BPHYT_RS22070: BPHYT_RS22070 - DNA-binding protein, at 508,898 to 509,350
_RS22070
Position (kb) 506
507
508
509 Strain fitness (log2 ratio) -2
-1
0
1
2 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.007 kb on - strand, within BPHYT_RS22060 at 506.165 kb on + strand, within BPHYT_RS22060 at 506.165 kb on + strand, within BPHYT_RS22060 at 506.213 kb on + strand, within BPHYT_RS22060 at 506.214 kb on - strand, within BPHYT_RS22060 at 506.214 kb on - strand, within BPHYT_RS22060 at 506.214 kb on - strand, within BPHYT_RS22060 at 506.319 kb on - strand, within BPHYT_RS22060 at 506.327 kb on + strand, within BPHYT_RS22060 at 506.327 kb on + strand, within BPHYT_RS22060 at 506.382 kb on - strand, within BPHYT_RS22060 at 506.420 kb on + strand, within BPHYT_RS22060 at 506.525 kb on - strand, within BPHYT_RS22060 at 506.690 kb on + strand at 506.690 kb on + strand at 506.740 kb on - strand at 506.831 kb on - strand at 506.850 kb on + strand at 506.851 kb on - strand at 506.963 kb on - strand at 507.103 kb on + strand, within BPHYT_RS22065 at 507.103 kb on + strand, within BPHYT_RS22065 at 507.589 kb on + strand, within BPHYT_RS22065 at 507.701 kb on - strand, within BPHYT_RS22065 at 507.811 kb on + strand, within BPHYT_RS22065 at 507.887 kb on - strand at 507.935 kb on - strand, within BPHYT_RS22065 at 507.959 kb on - strand, within BPHYT_RS22065 at 508.085 kb on - strand, within BPHYT_RS22065 at 508.268 kb on - strand at 508.315 kb on - strand at 508.381 kb on + strand at 508.466 kb on - strand at 508.573 kb on - strand at 508.676 kb on - strand at 508.685 kb on + strand at 508.788 kb on - strand at 508.788 kb on - strand at 509.377 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 506,006 + BPHYT_RS22060 0.55 +0.4 506,006 + BPHYT_RS22060 0.55 +0.1 506,006 + BPHYT_RS22060 0.55 -0.1 506,006 + BPHYT_RS22060 0.55 +0.9 506,006 + BPHYT_RS22060 0.55 -0.3 506,006 + BPHYT_RS22060 0.55 +0.1 506,006 + BPHYT_RS22060 0.55 +0.1 506,006 + BPHYT_RS22060 0.55 -0.0 506,006 + BPHYT_RS22060 0.55 +0.1 506,007 - BPHYT_RS22060 0.56 -0.1 506,165 + BPHYT_RS22060 0.66 +0.6 506,165 + BPHYT_RS22060 0.66 -0.0 506,213 + BPHYT_RS22060 0.69 +0.2 506,214 - BPHYT_RS22060 0.69 +0.1 506,214 - BPHYT_RS22060 0.69 -1.7 506,214 - BPHYT_RS22060 0.69 +0.4 506,319 - BPHYT_RS22060 0.76 +1.2 506,327 + BPHYT_RS22060 0.76 +1.2 506,327 + BPHYT_RS22060 0.76 +0.1 506,382 - BPHYT_RS22060 0.80 -0.3 506,420 + BPHYT_RS22060 0.82 -2.1 506,525 - BPHYT_RS22060 0.89 -0.7 506,690 + +0.3 506,690 + +0.2 506,740 - +1.3 506,831 - +1.3 506,850 + +0.6 506,851 - -1.0 506,963 - -0.9 507,103 + BPHYT_RS22065 0.13 +0.5 507,103 + BPHYT_RS22065 0.13 +2.2 507,589 + BPHYT_RS22065 0.46 -0.5 507,701 - BPHYT_RS22065 0.54 +0.2 507,811 + BPHYT_RS22065 0.61 +0.4 507,887 - +0.2 507,935 - BPHYT_RS22065 0.70 +0.0 507,959 - BPHYT_RS22065 0.71 -0.0 508,085 - BPHYT_RS22065 0.80 -0.1 508,268 - +0.2 508,315 - -0.8 508,381 + +0.7 508,466 - -0.2 508,573 - +2.2 508,676 - -1.7 508,685 + +0.9 508,788 - +0.6 508,788 - +0.8 509,377 + +0.6
Or see this region's nucleotide sequence