Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21770

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21765 and BPHYT_RS21770 are separated by 204 nucleotidesBPHYT_RS21770 and BPHYT_RS21775 overlap by 4 nucleotides BPHYT_RS21765: BPHYT_RS21765 - IclR family transcriptional regulator, at 438,866 to 439,630 _RS21765 BPHYT_RS21770: BPHYT_RS21770 - aldehyde dehydrogenase, at 439,835 to 441,280 _RS21770 BPHYT_RS21775: BPHYT_RS21775 - long-chain fatty acid--CoA ligase, at 441,277 to 442,938 _RS21775 Position (kb) 439 440 441 442Strain fitness (log2 ratio) -1 0 1at 438.841 kb on + strandat 439.344 kb on - strand, within BPHYT_RS21765at 439.650 kb on - strandat 439.796 kb on + strandat 439.813 kb on + strandat 440.091 kb on - strand, within BPHYT_RS21770at 440.655 kb on - strand, within BPHYT_RS21770at 441.541 kb on + strand, within BPHYT_RS21775at 441.542 kb on - strand, within BPHYT_RS21775at 441.542 kb on - strand, within BPHYT_RS21775at 441.598 kb on + strand, within BPHYT_RS21775at 441.599 kb on - strand, within BPHYT_RS21775at 441.601 kb on - strand, within BPHYT_RS21775at 442.199 kb on - strand, within BPHYT_RS21775

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
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438,841 + +0.4
439,344 - BPHYT_RS21765 0.62 +0.7
439,650 - -0.2
439,796 + +0.5
439,813 + -0.1
440,091 - BPHYT_RS21770 0.18 -1.6
440,655 - BPHYT_RS21770 0.57 -0.5
441,541 + BPHYT_RS21775 0.16 -0.2
441,542 - BPHYT_RS21775 0.16 +0.2
441,542 - BPHYT_RS21775 0.16 -0.7
441,598 + BPHYT_RS21775 0.19 +0.4
441,599 - BPHYT_RS21775 0.19 +0.0
441,601 - BPHYT_RS21775 0.19 +0.7
442,199 - BPHYT_RS21775 0.55 -0.5

Or see this region's nucleotide sequence