Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21745 and BPHYT_RS21750 are separated by 189 nucleotides BPHYT_RS21750 and BPHYT_RS21755 are separated by 119 nucleotides BPHYT_RS21755 and BPHYT_RS21760 overlap by 1 nucleotides BPHYT_RS21760 and BPHYT_RS21765 are separated by 132 nucleotides
BPHYT_RS21745: BPHYT_RS21745 - choline dehydrogenase, at 434,851 to 436,506
_RS21745
BPHYT_RS21750: BPHYT_RS21750 - major facilitator transporter, at 436,696 to 438,006
_RS21750
BPHYT_RS21755: BPHYT_RS21755 - twitching motility protein PilT, at 438,126 to 438,503
_RS21755
BPHYT_RS21760: BPHYT_RS21760 - antitoxin, at 438,503 to 438,733
_RS21760
BPHYT_RS21765: BPHYT_RS21765 - IclR family transcriptional regulator, at 438,866 to 439,630
_RS21765
Position (kb) 436
437
438
439 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 435.751 kb on + strand, within BPHYT_RS21745 at 435.752 kb on - strand, within BPHYT_RS21745 at 435.992 kb on - strand, within BPHYT_RS21745 at 436.082 kb on - strand, within BPHYT_RS21745 at 436.269 kb on + strand, within BPHYT_RS21745 at 436.392 kb on + strand at 436.583 kb on - strand at 436.583 kb on - strand at 436.608 kb on - strand at 436.659 kb on + strand at 436.696 kb on - strand at 437.116 kb on + strand, within BPHYT_RS21750 at 437.299 kb on + strand, within BPHYT_RS21750 at 437.432 kb on - strand, within BPHYT_RS21750 at 437.608 kb on + strand, within BPHYT_RS21750 at 437.609 kb on - strand, within BPHYT_RS21750 at 437.609 kb on - strand, within BPHYT_RS21750 at 437.793 kb on + strand, within BPHYT_RS21750 at 437.794 kb on - strand, within BPHYT_RS21750 at 437.812 kb on + strand, within BPHYT_RS21750 at 438.128 kb on - strand at 438.151 kb on + strand at 438.480 kb on - strand at 438.480 kb on - strand at 438.540 kb on - strand, within BPHYT_RS21760 at 438.832 kb on - strand at 438.841 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 435,751 + BPHYT_RS21745 0.54 +0.0 435,752 - BPHYT_RS21745 0.54 -0.1 435,992 - BPHYT_RS21745 0.69 -0.6 436,082 - BPHYT_RS21745 0.74 +1.2 436,269 + BPHYT_RS21745 0.86 -0.3 436,392 + +3.5 436,583 - +0.2 436,583 - +0.3 436,608 - -0.2 436,659 + -2.4 436,696 - -0.0 437,116 + BPHYT_RS21750 0.32 +0.5 437,299 + BPHYT_RS21750 0.46 -0.2 437,432 - BPHYT_RS21750 0.56 +0.1 437,608 + BPHYT_RS21750 0.70 +2.5 437,609 - BPHYT_RS21750 0.70 +0.7 437,609 - BPHYT_RS21750 0.70 +0.3 437,793 + BPHYT_RS21750 0.84 +0.4 437,794 - BPHYT_RS21750 0.84 +1.0 437,812 + BPHYT_RS21750 0.85 +0.1 438,128 - -0.8 438,151 + -0.6 438,480 - -2.4 438,480 - +0.1 438,540 - BPHYT_RS21760 0.16 +2.2 438,832 - -0.2 438,841 + +0.4
Or see this region's nucleotide sequence