Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21400 and BPHYT_RS21405 are separated by 33 nucleotides BPHYT_RS21405 and BPHYT_RS21410 are separated by 123 nucleotides
BPHYT_RS21400: BPHYT_RS21400 - membrane protein, at 360,587 to 361,492
_RS21400
BPHYT_RS21405: BPHYT_RS21405 - GTP cyclohydrolase, at 361,526 to 362,164
_RS21405
BPHYT_RS21410: BPHYT_RS21410 - LysR family transcriptional regulator, at 362,288 to 363,217
_RS21410
Position (kb) 361
362
363 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 360.551 kb on - strand at 360.609 kb on - strand at 360.614 kb on + strand at 361.254 kb on - strand at 361.384 kb on - strand, within BPHYT_RS21400 at 361.527 kb on + strand at 361.527 kb on + strand at 361.534 kb on + strand at 361.627 kb on + strand, within BPHYT_RS21405 at 361.839 kb on + strand, within BPHYT_RS21405 at 361.840 kb on - strand, within BPHYT_RS21405 at 361.887 kb on + strand, within BPHYT_RS21405 at 361.929 kb on + strand, within BPHYT_RS21405 at 361.930 kb on - strand, within BPHYT_RS21405 at 361.930 kb on - strand, within BPHYT_RS21405 at 361.983 kb on + strand, within BPHYT_RS21405 at 362.005 kb on - strand, within BPHYT_RS21405 at 362.155 kb on + strand at 362.156 kb on - strand at 362.156 kb on - strand at 362.643 kb on + strand, within BPHYT_RS21410 at 362.643 kb on + strand, within BPHYT_RS21410 at 362.643 kb on + strand, within BPHYT_RS21410 at 362.643 kb on + strand, within BPHYT_RS21410 at 362.644 kb on - strand, within BPHYT_RS21410 at 362.644 kb on - strand, within BPHYT_RS21410 at 362.644 kb on - strand, within BPHYT_RS21410 at 362.737 kb on + strand, within BPHYT_RS21410 at 362.737 kb on + strand, within BPHYT_RS21410 at 362.738 kb on - strand, within BPHYT_RS21410 at 362.926 kb on + strand, within BPHYT_RS21410 at 362.927 kb on - strand, within BPHYT_RS21410 at 362.927 kb on - strand, within BPHYT_RS21410 at 362.957 kb on + strand, within BPHYT_RS21410
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 360,551 - -0.1 360,609 - -0.2 360,614 + +0.1 361,254 - -0.7 361,384 - BPHYT_RS21400 0.88 -1.1 361,527 + +0.8 361,527 + -0.3 361,534 + -1.0 361,627 + BPHYT_RS21405 0.16 +0.9 361,839 + BPHYT_RS21405 0.49 +0.3 361,840 - BPHYT_RS21405 0.49 -0.2 361,887 + BPHYT_RS21405 0.56 -0.3 361,929 + BPHYT_RS21405 0.63 -0.0 361,930 - BPHYT_RS21405 0.63 -1.1 361,930 - BPHYT_RS21405 0.63 +0.4 361,983 + BPHYT_RS21405 0.72 -0.5 362,005 - BPHYT_RS21405 0.75 -0.3 362,155 + +0.3 362,156 - -0.8 362,156 - -0.2 362,643 + BPHYT_RS21410 0.38 +0.9 362,643 + BPHYT_RS21410 0.38 +0.3 362,643 + BPHYT_RS21410 0.38 +0.6 362,643 + BPHYT_RS21410 0.38 +0.8 362,644 - BPHYT_RS21410 0.38 -3.3 362,644 - BPHYT_RS21410 0.38 +0.3 362,644 - BPHYT_RS21410 0.38 +0.5 362,737 + BPHYT_RS21410 0.48 -0.3 362,737 + BPHYT_RS21410 0.48 -0.5 362,738 - BPHYT_RS21410 0.48 -0.4 362,926 + BPHYT_RS21410 0.69 -0.4 362,927 - BPHYT_RS21410 0.69 +1.3 362,927 - BPHYT_RS21410 0.69 +0.1 362,957 + BPHYT_RS21410 0.72 -1.4
Or see this region's nucleotide sequence