Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18495

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
4,159,230	-		BPHYT_RS18490	0.20	-0.0
4,159,260	+		BPHYT_RS18490	0.23	+3.6
4,159,260	+		BPHYT_RS18490	0.23	+0.3
4,159,260	+		BPHYT_RS18490	0.23	+1.0
4,159,260	+		BPHYT_RS18490	0.23	-0.4
4,159,260	+		BPHYT_RS18490	0.23	-0.4
4,159,261	-		BPHYT_RS18490	0.24	+1.9
4,159,264	-		BPHYT_RS18490	0.24	+0.2
4,159,289	+		BPHYT_RS18490	0.27	+0.2
4,159,326	-		BPHYT_RS18490	0.31	-0.0
4,159,474	+		BPHYT_RS18490	0.48	-1.2
4,159,474	+		BPHYT_RS18490	0.48	-0.5
4,159,475	-		BPHYT_RS18490	0.48	-0.2
4,159,529	+		BPHYT_RS18490	0.54	+0.2
4,159,529	+		BPHYT_RS18490	0.54	-0.9
4,159,530	-		BPHYT_RS18490	0.54	+0.3
4,159,530	-		BPHYT_RS18490	0.54	+0.5
4,159,861	+				+0.2
4,159,904	+				-1.9
4,159,904	+				-0.4
4,159,905	-				+0.7
4,159,948	+				-0.9
4,159,949	-				+0.8
4,159,949	-				+0.7
4,160,019	+				-0.5
4,160,019	+				+0.2
4,160,019	+				-0.3
4,160,019	+				+1.0
4,160,020	-				-0.2
4,160,020	-				-1.0
4,160,020	-				-1.7
4,160,022	+				+0.4
4,160,149	+				+1.2
4,160,149	+				-2.7
4,160,197	+				-0.2
4,160,197	+				+0.6
4,160,197	+				+0.7
4,160,197	+				-0.8
4,160,197	+				+1.1
4,160,198	-				-0.1
4,160,198	-				+0.5
4,160,220	+				-1.2
4,160,220	+				+0.5
4,160,220	+				+0.4
4,160,220	+				+0.8
4,160,227	+				+0.8
4,160,256	+				-2.2
4,160,256	+				+0.2
4,160,257	-				-1.8
4,160,257	-				-0.2
4,160,553	+		BPHYT_RS18495	0.29	+2.3
4,160,554	-		BPHYT_RS18495	0.29	-0.4
4,160,554	-		BPHYT_RS18495	0.29	+0.4
4,160,597	-		BPHYT_RS18495	0.32	-0.7
4,160,597	-		BPHYT_RS18495	0.32	-2.7
4,160,730	+		BPHYT_RS18495	0.41	-1.0
4,160,731	-		BPHYT_RS18495	0.41	+0.5
4,160,750	+		BPHYT_RS18495	0.42	+1.1
4,160,859	-		BPHYT_RS18495	0.50	+0.6
4,160,906	-		BPHYT_RS18495	0.53	+1.7
4,160,923	+		BPHYT_RS18495	0.54	-2.0
4,160,923	+		BPHYT_RS18495	0.54	-0.1
4,160,923	+		BPHYT_RS18495	0.54	-0.8
4,160,924	-		BPHYT_RS18495	0.54	-0.9
4,160,935	-		BPHYT_RS18495	0.55	+0.6
4,160,986	+		BPHYT_RS18495	0.58	+0.5
4,160,987	-		BPHYT_RS18495	0.59	-0.4
4,161,146	+		BPHYT_RS18495	0.69	+2.1
4,161,147	-		BPHYT_RS18495	0.69	+0.4
4,161,151	+		BPHYT_RS18495	0.70	-0.1
4,161,151	+		BPHYT_RS18495	0.70	+0.7
4,161,152	-		BPHYT_RS18495	0.70	+0.5
4,161,152	-		BPHYT_RS18495	0.70	-0.0
4,161,152	-		BPHYT_RS18495	0.70	-0.2
4,161,198	+		BPHYT_RS18495	0.73	+1.3
4,161,198	+		BPHYT_RS18495	0.73	-1.0
4,161,199	-		BPHYT_RS18495	0.73	+0.9
4,161,319	+		BPHYT_RS18495	0.81	+1.0
4,161,320	-		BPHYT_RS18495	0.81	+0.1
4,161,349	+		BPHYT_RS18495	0.83	-0.8
4,161,349	+		BPHYT_RS18495	0.83	+0.4
4,161,350	-		BPHYT_RS18495	0.83	+0.4
4,161,394	+		BPHYT_RS18495	0.86	+1.1
4,161,394	+		BPHYT_RS18495	0.86	+0.8
4,161,395	-		BPHYT_RS18495	0.86	-0.3
4,161,420	-		BPHYT_RS18495	0.88	+0.5
4,161,420	-		BPHYT_RS18495	0.88	+0.1
4,161,420	-		BPHYT_RS18495	0.88	+0.5
4,161,420	-		BPHYT_RS18495	0.88	+0.9
4,161,420	-		BPHYT_RS18495	0.88	+0.0
4,161,422	+		BPHYT_RS18495	0.88	-0.5
4,161,422	+		BPHYT_RS18495	0.88	+0.5
4,161,422	+		BPHYT_RS18495	0.88	+0.1
4,161,422	+		BPHYT_RS18495	0.88	-0.9
4,161,423	-		BPHYT_RS18495	0.88	+1.4
4,161,423	-		BPHYT_RS18495	0.88	-0.0
4,161,423	-		BPHYT_RS18495	0.88	+1.1
4,161,423	-		BPHYT_RS18495	0.88	-0.7
4,161,487	+				+0.4
4,161,519	+				-0.2
4,161,520	-				+0.4
4,161,520	-				+1.7
4,161,679	-				+0.1
4,161,695	-				+0.8
4,161,697	-				-1.6
4,161,745	+				+0.5
4,161,745	+				+0.1
4,161,745	+				-0.6
4,161,746	-				+1.0
4,161,746	-				-1.0
4,161,746	-				+0.9
4,161,746	-				-0.1
4,161,746	-				-0.4
4,161,746	-				+0.3
4,161,747	+				+0.2
4,161,747	+				+0.7
4,161,748	-				-0.0
4,161,748	-				+0.5
4,161,749	+				-0.1
4,161,749	+				+0.2
4,161,749	+				+2.3
4,161,749	+				+0.3
4,161,749	+				+0.1
4,161,750	-				+0.7
4,161,750	-				+0.3
4,161,750	-				-0.0
4,162,018	+		BPHYT_RS18500	0.37	+0.3
4,162,100	-		BPHYT_RS18500	0.46	-1.2
4,162,100	-		BPHYT_RS18500	0.46	+0.1
4,162,149	+		BPHYT_RS18500	0.52	-1.1
4,162,149	+		BPHYT_RS18500	0.52	-0.9
4,162,149	+		BPHYT_RS18500	0.52	+0.2
4,162,150	-		BPHYT_RS18500	0.52	-1.1
4,162,150	-		BPHYT_RS18500	0.52	+0.1
4,162,327	-		BPHYT_RS18500	0.71	+0.4
4,162,359	-		BPHYT_RS18500	0.75	-1.2
4,162,389	+		BPHYT_RS18500	0.78	-0.7
4,162,390	-		BPHYT_RS18500	0.78	-0.7
4,162,458	-		BPHYT_RS18500	0.86	+1.2
4,162,458	-		BPHYT_RS18500	0.86	+0.5
4,162,465	+		BPHYT_RS18500	0.86	-0.1
4,162,466	-		BPHYT_RS18500	0.87	-0.1
4,162,466	-		BPHYT_RS18500	0.87	+0.2
4,162,534	+				+1.2
4,162,535	-				-0.3
4,162,577	-				-0.4