Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17705

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
3,998,612	+		BPHYT_RS17695	0.82	-4.8
3,998,612	+		BPHYT_RS17695	0.82	-6.1
3,998,613	-		BPHYT_RS17695	0.83	-1.4
3,998,613	-		BPHYT_RS17695	0.83	+0.2
3,998,613	-		BPHYT_RS17695	0.83	+0.3
3,998,699	+				-3.7
3,998,700	-				+0.1
3,998,765	+				-3.0
3,998,779	+				-2.4
3,998,802	-				-0.3
3,998,802	-				+1.1
3,999,104	+		BPHYT_RS17700	0.52	-1.4
3,999,105	-		BPHYT_RS17700	0.52	-6.3
3,999,132	+		BPHYT_RS17700	0.56	-3.0
3,999,133	-		BPHYT_RS17700	0.57	-0.9
3,999,133	-		BPHYT_RS17700	0.57	-0.4
3,999,175	-		BPHYT_RS17700	0.64	-2.6
3,999,175	-		BPHYT_RS17700	0.64	+0.4
3,999,408	+				-3.8
3,999,409	-				+0.8
3,999,409	-				+1.4
3,999,409	-				+0.5
3,999,422	+				-0.9
3,999,422	+				-5.2
3,999,423	-				+0.9
3,999,423	-				-0.5
3,999,453	+				-3.3
3,999,453	+				-1.7
3,999,454	-				+0.6
3,999,454	-				-1.1
3,999,600	-				+0.4
3,999,600	-				+0.8
3,999,633	+		BPHYT_RS17705	0.12	-2.3
3,999,634	-		BPHYT_RS17705	0.12	-0.4
3,999,780	+		BPHYT_RS17705	0.26	+1.5
3,999,781	-		BPHYT_RS17705	0.26	+0.3
3,999,833	+		BPHYT_RS17705	0.31	-0.2
3,999,833	+		BPHYT_RS17705	0.31	+0.4
3,999,834	-		BPHYT_RS17705	0.31	+0.4
3,999,834	-		BPHYT_RS17705	0.31	-0.1
3,999,834	-		BPHYT_RS17705	0.31	+1.3
3,999,838	+		BPHYT_RS17705	0.31	-0.2
3,999,838	+		BPHYT_RS17705	0.31	+0.0
4,000,000	+		BPHYT_RS17705	0.47	+1.0
4,000,001	-		BPHYT_RS17705	0.47	+0.4
4,000,001	-		BPHYT_RS17705	0.47	-0.6
4,000,028	+		BPHYT_RS17705	0.49	-0.6
4,000,028	+		BPHYT_RS17705	0.49	+0.1
4,000,069	+		BPHYT_RS17705	0.53	+0.0
4,000,105	+		BPHYT_RS17705	0.56	+0.1
4,000,105	+		BPHYT_RS17705	0.56	+0.5
4,000,105	+		BPHYT_RS17705	0.56	+1.0
4,000,106	-		BPHYT_RS17705	0.56	-0.6
4,000,106	-		BPHYT_RS17705	0.56	+3.4
4,000,106	-		BPHYT_RS17705	0.56	+0.2
4,000,106	-		BPHYT_RS17705	0.56	-3.5
4,000,106	-		BPHYT_RS17705	0.56	-0.2
4,000,106	-				-3.1
4,000,106	-		BPHYT_RS17705	0.56	-0.0
4,000,226	-		BPHYT_RS17705	0.68	-0.1
4,000,226	-		BPHYT_RS17705	0.68	+0.6
4,000,495	+				-0.6
4,000,571	+				-0.2
4,000,571	+				+0.4
4,000,571	+				+0.7
4,000,572	-				+0.3
4,000,572	-				+0.8
4,000,572	-				-0.8
4,000,644	-				+0.7
4,000,653	-				+0.4
4,000,656	-				+0.6
4,000,735	+				-0.0
4,000,736	-				+0.1
4,000,741	+				+1.2
4,000,929	+		BPHYT_RS17710	0.14	-1.9