Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17680

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
3,994,473	+		BPHYT_RS17665	0.75	+1.0
3,994,492	+		BPHYT_RS17665	0.80	-0.3
3,994,549	-				+1.1
3,994,660	+				+0.3
3,994,948	+		BPHYT_RS17670	0.71	-4.0
3,994,949	-		BPHYT_RS17670	0.72	-4.4
3,994,949	-		BPHYT_RS17670	0.72	+0.1
3,994,949	-		BPHYT_RS17670	0.72	-3.4
3,995,009	+		BPHYT_RS17670	0.87	-2.4
3,995,009	+		BPHYT_RS17670	0.87	-3.6
3,995,064	+				-3.0
3,995,064	+				-5.6
3,995,064	+				-3.0
3,995,064	+				-1.8
3,995,064	+				-3.8
3,995,065	-				-0.0
3,995,065	-				-0.2
3,995,065	-				-0.0
3,995,065	-				+0.1
3,995,305	-		BPHYT_RS17675	0.61	-6.3
3,995,536	+				-6.0
3,995,666	+		BPHYT_RS17680	0.25	-3.6
3,995,881	+		BPHYT_RS17680	0.53	-1.8
3,995,882	-		BPHYT_RS17680	0.53	-3.8
3,995,882	-		BPHYT_RS17680	0.53	-4.9
3,996,230	+				-1.9
3,996,230	+				-5.5
3,996,235	-				-5.7
3,996,235	-				-1.9
3,996,482	-				+0.1
3,996,482	-				-0.6
3,996,733	+		BPHYT_RS17685	0.34	-1.7
3,996,754	+		BPHYT_RS17685	0.36	-6.0
3,996,755	-		BPHYT_RS17685	0.37	-2.8
3,996,857	+		BPHYT_RS17685	0.50	-3.9
3,996,857	+		BPHYT_RS17685	0.50	-3.5
3,996,932	-		BPHYT_RS17685	0.60	-6.2
3,996,932	-		BPHYT_RS17685	0.60	-4.1
3,996,932	-		BPHYT_RS17685	0.60	-3.4
3,996,952	+		BPHYT_RS17685	0.63	-4.6
3,996,953	-		BPHYT_RS17685	0.63	-5.3
3,997,188	+				-6.0
3,997,188	+				-3.7
3,997,188	+				-1.1
3,997,189	-				-3.8
3,997,232	+				-2.9
3,997,232	+				-4.0
3,997,233	-				-2.4
3,997,233	-				-3.4
3,997,233	-				-5.1
3,997,233	-				-5.4
3,997,233	-				-3.5