Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17450

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
3,951,915	-		BPHYT_RS17445	0.25	+0.1
3,952,015	+		BPHYT_RS17445	0.35	-0.3
3,952,015	+		BPHYT_RS17445	0.35	+1.6
3,952,249	-		BPHYT_RS17445	0.56	+0.6
3,952,483	-		BPHYT_RS17445	0.77	-2.6
3,952,609	-		BPHYT_RS17445	0.89	-2.3
3,952,617	+		BPHYT_RS17445	0.90	+0.2
3,952,618	-		BPHYT_RS17445	0.90	+0.9
3,952,626	+				-1.5
3,952,626	+				+0.3
3,952,626	+				+0.2
3,952,627	-				-2.8
3,952,789	+				+0.1
3,952,790	-				+0.3
3,952,950	-		BPHYT_RS17450	0.13	+0.8
3,953,037	+		BPHYT_RS17450	0.21	+2.4
3,953,037	+		BPHYT_RS17450	0.21	+0.8
3,953,038	-		BPHYT_RS17450	0.22	+1.5
3,953,042	+		BPHYT_RS17450	0.22	+0.9
3,953,264	-		BPHYT_RS17450	0.45	+0.4
3,953,548	+		BPHYT_RS17450	0.74	+0.7
3,953,718	-				-0.8
3,953,772	-				-0.5
3,953,818	+				-0.1
3,953,821	+				-0.4
3,953,822	-				+0.8
3,953,835	+				-1.3
3,953,836	-				+0.3
3,953,836	-				-0.1
3,953,840	+				-0.5
3,953,840	+				-0.5
3,953,841	-				-0.2
3,953,984	+				+0.0
3,954,008	+				-1.6
3,954,064	-				-0.4
3,954,285	-		BPHYT_RS17455	0.13	+0.8
3,954,315	-		BPHYT_RS17455	0.15	-0.4
3,954,383	+		BPHYT_RS17455	0.20	+0.9
3,954,384	-		BPHYT_RS17455	0.20	+0.2
3,954,384	-		BPHYT_RS17455	0.20	-1.5
3,954,503	+		BPHYT_RS17455	0.29	-0.1
3,954,503	+		BPHYT_RS17455	0.29	-0.1
3,954,504	-		BPHYT_RS17455	0.29	+0.1
3,954,504	-		BPHYT_RS17455	0.29	+0.9
3,954,504	-		BPHYT_RS17455	0.29	+0.0
3,954,569	+		BPHYT_RS17455	0.34	+0.2
3,954,570	-		BPHYT_RS17455	0.34	+1.1
3,954,570	-		BPHYT_RS17455	0.34	+0.5
3,954,572	+		BPHYT_RS17455	0.35	-0.6
3,954,572	+		BPHYT_RS17455	0.35	+0.8
3,954,573	-		BPHYT_RS17455	0.35	+0.4
3,954,687	-		BPHYT_RS17455	0.43	+0.2
3,954,725	+		BPHYT_RS17455	0.46	+0.3
3,954,726	-		BPHYT_RS17455	0.46	+0.5