Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16015

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
3,633,186	-		BPHYT_RS16005	0.90	-0.0
3,633,246	+				+1.6
3,633,246	+				+1.9
3,633,246	+				+0.0
3,633,247	-				-0.0
3,633,247	-				-0.2
3,633,424	-		BPHYT_RS16010	0.11	-0.5
3,633,436	+		BPHYT_RS16010	0.13	+1.1
3,633,463	+		BPHYT_RS16010	0.18	+0.5
3,633,464	-		BPHYT_RS16010	0.18	-0.4
3,633,539	-		BPHYT_RS16010	0.32	+0.8
3,633,542	+		BPHYT_RS16010	0.33	-0.5
3,633,687	-		BPHYT_RS16010	0.59	+0.4
3,633,848	-		BPHYT_RS16010	0.88	+0.8
3,633,934	+				-0.1
3,633,934	+				+0.0
3,633,934	+				+0.5
3,634,249	+		BPHYT_RS16015	0.16	-0.8
3,634,252	+		BPHYT_RS16015	0.16	-1.5
3,634,253	-		BPHYT_RS16015	0.16	+0.0
3,634,336	-		BPHYT_RS16015	0.33	-0.1
3,634,391	+		BPHYT_RS16015	0.44	-0.9
3,634,392	-		BPHYT_RS16015	0.44	-0.2
3,634,541	-		BPHYT_RS16015	0.73	-0.2
3,634,888	-		BPHYT_RS16020	0.37	+0.0
3,635,035	+		BPHYT_RS16020	0.66	+0.3
3,635,049	+		BPHYT_RS16020	0.68	+0.9
3,635,343	-				+0.2
3,635,517	+		BPHYT_RS16025	0.27	-0.0
3,635,517	+		BPHYT_RS16025	0.27	+0.6
3,635,518	-		BPHYT_RS16025	0.27	-0.7
3,635,663	-		BPHYT_RS16025	0.50	-0.5
3,635,673	+		BPHYT_RS16025	0.52	+1.1