Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15820

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
3,589,828	-		BPHYT_RS15810	0.83	+1.7
3,589,828	-		BPHYT_RS15810	0.83	+0.0
3,589,999	+				+0.1
3,590,011	+				-0.3
3,590,011	+				-0.6
3,590,012	-				-0.5
3,590,416	-				-0.4
3,590,416	-				-1.3
3,590,709	-		BPHYT_RS15820	0.10	+0.0
3,590,741	+		BPHYT_RS15820	0.12	-1.3
3,590,741	+		BPHYT_RS15820	0.12	-0.1
3,590,742	-		BPHYT_RS15820	0.12	-0.1
3,590,795	+		BPHYT_RS15820	0.16	-0.1
3,591,149	+		BPHYT_RS15820	0.41	-0.9
3,591,149	+		BPHYT_RS15820	0.41	+0.4
3,591,150	-		BPHYT_RS15820	0.41	+4.7
3,591,150	-		BPHYT_RS15820	0.41	-0.8
3,591,150	-		BPHYT_RS15820	0.41	+0.1
3,591,197	+		BPHYT_RS15820	0.44	+1.2
3,591,197	+		BPHYT_RS15820	0.44	-1.0
3,591,197	+		BPHYT_RS15820	0.44	-0.1
3,591,197	+		BPHYT_RS15820	0.44	-2.0
3,591,430	+		BPHYT_RS15820	0.61	+0.2
3,591,431	-		BPHYT_RS15820	0.61	+1.8
3,591,431	-		BPHYT_RS15820	0.61	+0.5
3,591,434	+		BPHYT_RS15820	0.61	-0.1
3,591,434	+		BPHYT_RS15820	0.61	-0.6
3,591,435	-		BPHYT_RS15820	0.61	+0.8
3,591,435	-		BPHYT_RS15820	0.61	+0.7
3,591,435	-		BPHYT_RS15820	0.61	-0.4
3,591,500	+		BPHYT_RS15820	0.66	+0.1
3,591,501	-		BPHYT_RS15820	0.66	+0.2
3,591,675	-		BPHYT_RS15820	0.78	+0.1
3,592,021	+				+0.8
3,592,022	-				-0.1
3,592,097	+				-0.5
3,592,097	+				-0.1
3,592,098	-				+0.8
3,592,252	+		BPHYT_RS15825	0.13	-0.2
3,592,391	+		BPHYT_RS15825	0.23	+0.3
3,592,478	+		BPHYT_RS15825	0.29	+2.0
3,592,704	+		BPHYT_RS15825	0.44	+0.0
3,592,828	-		BPHYT_RS15825	0.53	-2.0
3,592,889	+		BPHYT_RS15825	0.57	+0.7
3,592,889	+		BPHYT_RS15825	0.57	+0.8