Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15660

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
3,550,871	-				-0.1
3,550,905	-				-1.6
3,550,927	+				-2.2
3,550,928	-				+0.5
3,550,951	+				+0.7
3,551,181	+		BPHYT_RS15660	0.11	+0.3
3,551,182	-		BPHYT_RS15660	0.11	+0.3
3,551,182	-		BPHYT_RS15660	0.11	+0.8
3,551,259	+		BPHYT_RS15660	0.17	-0.6
3,551,373	+		BPHYT_RS15660	0.25	+0.5
3,551,374	-		BPHYT_RS15660	0.25	+1.3
3,551,374	-		BPHYT_RS15660	0.25	-0.2
3,551,387	-		BPHYT_RS15660	0.26	-0.4
3,551,418	-		BPHYT_RS15660	0.29	-1.1
3,551,606	+		BPHYT_RS15660	0.43	-0.7
3,551,607	-		BPHYT_RS15660	0.43	+0.7
3,551,607	-		BPHYT_RS15660	0.43	-0.5
3,551,607	-		BPHYT_RS15660	0.43	-2.5
3,551,683	-		BPHYT_RS15660	0.48	+0.6
3,551,854	+		BPHYT_RS15660	0.61	-1.1
3,551,868	+		BPHYT_RS15660	0.62	-0.9
3,551,869	-		BPHYT_RS15660	0.62	+2.4
3,552,369	+				+2.7
3,552,369	+				+0.9
3,552,369	+				-0.8
3,552,369	+				-1.2
3,552,369	+				+0.4
3,552,369	+				-0.8
3,552,370	-				-0.2
3,552,370	-				-0.2
3,552,370	-				-1.5
3,552,370	-				+0.4
3,552,370	-				-0.5
3,552,470	+				+0.1
3,552,470	+				-0.4
3,552,471	-				+0.2
3,552,471	-				+0.5
3,552,539	+				-1.2
3,553,353	-		BPHYT_RS15665	0.70	-1.0