Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14965

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
3,401,194	+				+0.8
3,401,298	+				-0.8
3,401,298	+				-0.1
3,401,298	+				-2.0
3,401,299	-				+1.6
3,401,299	-				+2.1
3,401,300	+				-0.0
3,401,300	+				+0.5
3,401,300	+				-0.5
3,401,301	-				-0.3
3,401,301	-				-0.6
3,401,301	-				-1.1
3,401,301	-				+2.1
3,401,351	+		BPHYT_RS14955	0.26	-0.3
3,401,352	-		BPHYT_RS14955	0.27	+0.9
3,401,402	+		BPHYT_RS14955	0.54	+0.4
3,401,403	-		BPHYT_RS14955	0.55	+1.4
3,401,403	-		BPHYT_RS14955	0.55	-0.8
3,401,413	-		BPHYT_RS14955	0.60	+0.5
3,401,457	-		BPHYT_RS14955	0.84	+0.2
3,401,504	+				+0.3
3,401,583	-				-0.2
3,401,607	+		BPHYT_RS14960	0.14	-0.3
3,401,607	+		BPHYT_RS14960	0.14	+0.1
3,401,608	-		BPHYT_RS14960	0.14	+0.2
3,401,610	+		BPHYT_RS14960	0.14	-0.1
3,401,610	+		BPHYT_RS14960	0.14	-0.3
3,401,610	+		BPHYT_RS14960	0.14	-0.2
3,401,610	+		BPHYT_RS14960	0.14	-0.4
3,401,657	-		BPHYT_RS14960	0.23	-1.4
3,401,779	-		BPHYT_RS14960	0.45	+0.1
3,401,894	-		BPHYT_RS14960	0.66	+0.1
3,401,944	+		BPHYT_RS14960	0.75	-0.3
3,401,945	-		BPHYT_RS14960	0.75	-0.2
3,402,038	-				+2.0
3,402,038	-				-1.2
3,402,087	-				+0.3
3,402,108	-				+0.7
3,402,117	+				+0.4
3,402,118	-				-1.1
3,402,162	+		BPHYT_RS14965	0.12	-0.2
3,402,206	-		BPHYT_RS14965	0.19	+0.7
3,402,220	+		BPHYT_RS14965	0.21	+1.0
3,402,325	-		BPHYT_RS14965	0.38	+2.3
3,402,325	-		BPHYT_RS14965	0.38	+0.1
3,402,325	-		BPHYT_RS14965	0.38	+0.6
3,402,435	+		BPHYT_RS14965	0.56	-1.0
3,402,752	+				+1.4
3,402,752	+				+0.9
3,402,753	-				-0.8
3,402,753	-				+1.9
3,402,753	-				+0.1
3,402,753	-				+0.6
3,402,753	-				+0.7
3,402,770	+				+0.1
3,402,844	+				+0.8
3,402,884	-				+0.3
3,402,957	+				+1.4
3,402,957	+				+0.2
3,402,958	-				+0.2
3,402,958	-				-0.4
3,402,996	+				+0.9
3,403,018	+				-0.4
3,403,057	+				+0.7
3,403,067	-				+1.0
3,403,079	-				-0.5
3,403,131	+				-1.5
3,403,249	+				+0.9
3,403,249	+				-0.2
3,403,362	+				+0.2
3,403,408	-				+0.1
3,403,657	-				+0.2
3,403,657	-				+0.1