Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13800

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
3,143,077	+		BPHYT_RS13795	0.13	+2.3
3,143,144	-		BPHYT_RS13795	0.21	+1.3
3,143,178	-		BPHYT_RS13795	0.24	+0.6
3,143,223	-		BPHYT_RS13795	0.29	+0.4
3,143,418	-		BPHYT_RS13795	0.50	+0.6
3,143,418	-		BPHYT_RS13795	0.50	+0.7
3,143,533	+		BPHYT_RS13795	0.63	+0.5
3,143,747	+		BPHYT_RS13795	0.86	-1.1
3,144,070	+		BPHYT_RS13800	0.17	+0.2
3,144,070	+		BPHYT_RS13800	0.17	+1.0
3,144,074	+		BPHYT_RS13800	0.17	-2.4
3,144,148	-		BPHYT_RS13800	0.24	-2.1
3,144,246	+		BPHYT_RS13800	0.32	-0.6
3,144,294	-		BPHYT_RS13800	0.36	+0.2
3,144,573	+		BPHYT_RS13800	0.59	+0.1
3,144,574	-		BPHYT_RS13800	0.59	+0.6
3,144,574	-		BPHYT_RS13800	0.59	+1.7
3,144,716	+		BPHYT_RS13800	0.71	-0.5
3,144,717	-		BPHYT_RS13800	0.71	-0.3
3,144,798	+		BPHYT_RS13800	0.78	-0.3
3,144,825	-		BPHYT_RS13800	0.80	-0.1
3,145,274	-				-0.3
3,145,415	-				-0.6
3,145,416	+				+0.2
3,145,417	-				-0.1
3,145,417	-				+0.4
3,145,417	-				+1.2
3,145,639	+		BPHYT_RS13805	0.12	+0.8
3,145,691	-		BPHYT_RS13805	0.14	-0.7