Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13770

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
3,136,435	+		BPHYT_RS13765	0.16	+0.8
3,136,870	+		BPHYT_RS13765	0.62	-1.0
3,136,870	+		BPHYT_RS13765	0.62	+1.1
3,136,907	-		BPHYT_RS13765	0.66	-0.5
3,136,907	-		BPHYT_RS13765	0.66	-1.4
3,136,907	-		BPHYT_RS13765	0.66	-0.5
3,137,142	-				-0.6
3,137,222	+				-1.3
3,137,223	-				+0.0
3,137,223	-				+0.1
3,137,223	-				+0.4
3,137,356	-				-3.5
3,137,430	+				+0.4
3,137,431	-				+0.1
3,137,573	+		BPHYT_RS13770	0.11	+1.6
3,137,753	+		BPHYT_RS13770	0.21	-1.1
3,137,753	+		BPHYT_RS13770	0.21	+0.1
3,137,754	-		BPHYT_RS13770	0.21	+0.1
3,137,820	-		BPHYT_RS13770	0.24	+0.2
3,137,943	-		BPHYT_RS13770	0.31	+0.9
3,137,943	-		BPHYT_RS13770	0.31	-0.4
3,138,534	-		BPHYT_RS13770	0.64	+0.2
3,138,535	+		BPHYT_RS13770	0.64	-0.8
3,138,536	-		BPHYT_RS13770	0.64	+0.1
3,138,536	-		BPHYT_RS13770	0.64	+0.1
3,138,650	+		BPHYT_RS13770	0.70	+0.4
3,138,693	-		BPHYT_RS13770	0.72	+0.4
3,139,177	+				+1.5
3,139,304	-				+0.3
3,139,304	-				+0.4
3,139,305	-				+0.9
3,139,475	+		BPHYT_RS13775	0.13	+0.8
3,139,475	+		BPHYT_RS13775	0.13	+0.3
3,139,476	-		BPHYT_RS13775	0.13	+0.4
3,139,476	-		BPHYT_RS13775	0.13	-0.2
3,139,557	+		BPHYT_RS13775	0.16	+0.2
3,139,595	-		BPHYT_RS13775	0.18	-0.0
3,139,615	+		BPHYT_RS13775	0.19	+0.5
3,139,617	+		BPHYT_RS13775	0.19	-0.1
3,139,618	-		BPHYT_RS13775	0.19	-0.4
3,139,807	+		BPHYT_RS13775	0.28	+0.3
3,139,808	-		BPHYT_RS13775	0.28	+0.1
3,139,808	-		BPHYT_RS13775	0.28	+0.3
3,140,173	+		BPHYT_RS13775	0.44	+0.1
3,140,174	-		BPHYT_RS13775	0.44	+0.2
3,140,174	-		BPHYT_RS13775	0.44	-3.0