Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12960

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
2,957,765	+				+0.1
2,957,836	+				+0.5
2,957,836	+				+0.3
2,957,836	+				-0.6
2,957,837	-				-0.0
2,957,837	-				-0.1
2,957,837	-				-2.7
2,957,837	-				-0.6
2,957,999	-		BPHYT_RS12955	0.18	+0.2
2,958,163	+		BPHYT_RS12955	0.37	+0.0
2,958,163	+		BPHYT_RS12955	0.37	-0.4
2,958,163	+		BPHYT_RS12955	0.37	-1.9
2,958,164	-		BPHYT_RS12955	0.38	+0.8
2,958,296	-		BPHYT_RS12955	0.53	-0.7
2,958,565	+		BPHYT_RS12955	0.85	+0.0
2,958,565	+		BPHYT_RS12955	0.85	-0.2
2,958,795	+				-0.5
2,958,795	+				-1.8
2,958,796	-				-0.7
2,958,809	+		BPHYT_RS12960	0.11	-0.1
2,958,810	-		BPHYT_RS12960	0.11	-2.7
2,958,821	+		BPHYT_RS12960	0.12	+0.2
2,958,822	-		BPHYT_RS12960	0.12	-1.1
2,958,837	+		BPHYT_RS12960	0.14	+0.3
2,958,837	+		BPHYT_RS12960	0.14	-0.3
2,958,837	+		BPHYT_RS12960	0.14	+0.4
2,958,837	+		BPHYT_RS12960	0.14	+1.1
2,958,838	-		BPHYT_RS12960	0.14	-1.9
2,958,838	-		BPHYT_RS12960	0.14	+1.2
2,959,023	+		BPHYT_RS12960	0.36	+0.2
2,959,039	-		BPHYT_RS12960	0.38	-0.9
2,959,168	-		BPHYT_RS12960	0.54	-0.6
2,959,306	+		BPHYT_RS12960	0.70	-0.9
2,959,363	-		BPHYT_RS12960	0.77	+0.0
2,959,648	+				-0.2
2,959,648	+				+0.4
2,959,649	-				+1.0
2,959,917	+		BPHYT_RS12965	0.22	+1.3
2,960,007	+		BPHYT_RS12965	0.31	-1.3
2,960,008	-		BPHYT_RS12965	0.31	-0.8
2,960,069	+		BPHYT_RS12965	0.37	+0.1
2,960,242	-		BPHYT_RS12965	0.54	+0.6
2,960,274	+		BPHYT_RS12965	0.57	+0.6
2,960,275	-		BPHYT_RS12965	0.58	-0.4
2,960,347	+		BPHYT_RS12965	0.65	+0.6
2,960,347	+		BPHYT_RS12965	0.65	+0.6
2,960,348	-		BPHYT_RS12965	0.65	-0.8
2,960,440	+		BPHYT_RS12965	0.74	+0.1
2,960,440	+		BPHYT_RS12965	0.74	+1.3
2,960,441	-		BPHYT_RS12965	0.74	+0.7
2,960,441	-		BPHYT_RS12965	0.74	+1.2
2,960,441	-		BPHYT_RS12965	0.74	+0.4
2,960,442	+		BPHYT_RS12965	0.74	+0.6
2,960,443	-		BPHYT_RS12965	0.74	-0.5
2,960,443	-		BPHYT_RS12965	0.74	+1.2
2,960,443	-				+0.0
2,960,443	-		BPHYT_RS12965	0.74	+0.8
2,960,523	+		BPHYT_RS12965	0.82	+0.2