Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11380

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
2,583,632	+		BPHYT_RS11375	0.79	+2.1
2,583,821	-		BPHYT_RS11375	0.85	-0.7
2,583,821	-		BPHYT_RS11375	0.85	+1.0
2,584,040	+				+0.0
2,584,213	-				-0.6
2,584,227	+				-0.9
2,584,289	+				+0.5
2,584,427	+				+1.7
2,584,766	+		BPHYT_RS11380	0.30	+0.3
2,584,766	+		BPHYT_RS11380	0.30	-0.7
2,584,767	-		BPHYT_RS11380	0.30	+0.1
2,584,768	+		BPHYT_RS11380	0.30	+1.6
2,584,768	+		BPHYT_RS11380	0.30	-0.2
2,584,769	-		BPHYT_RS11380	0.30	-1.5
2,584,982	+		BPHYT_RS11380	0.44	+0.4
2,585,329	+		BPHYT_RS11380	0.67	+0.6
2,585,444	-		BPHYT_RS11380	0.74	+0.3
2,585,689	+				+0.3
2,585,690	-				-0.0
2,586,043	+				-0.4
2,586,084	-				-0.8
2,586,226	-				+0.1
2,586,226	-				+1.3
2,586,226	-				+0.0
2,586,230	-				+0.7
2,586,274	-				-2.3
2,586,274	-				-0.7
2,586,337	-				-1.9
2,586,454	-		BPHYT_RS11385	0.20	-0.4
2,586,742	+		BPHYT_RS11385	0.52	-0.1
2,586,774	+		BPHYT_RS11385	0.56	+0.8