Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09035

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
2,043,391	-				+0.9
2,043,477	+				+0.2
2,043,477	+				-0.8
2,043,507	-				-2.1
2,043,524	+				+1.2
2,043,569	-		BPHYT_RS09030	0.14	-0.9
2,043,698	+		BPHYT_RS09030	0.29	+0.7
2,043,698	+		BPHYT_RS09030	0.29	+0.1
2,043,699	-		BPHYT_RS09030	0.29	+0.4
2,043,833	+		BPHYT_RS09030	0.45	+0.8
2,043,834	-		BPHYT_RS09030	0.45	-1.4
2,043,834	-		BPHYT_RS09030	0.45	-0.9
2,043,834	-		BPHYT_RS09030	0.45	-0.2
2,043,983	+		BPHYT_RS09030	0.63	+1.2
2,044,238	-				-0.3
2,044,371	-				-0.6
2,044,371	-				-0.2
2,044,711	+		BPHYT_RS09035	0.26	+0.2
2,044,711	+		BPHYT_RS09035	0.26	-0.3
2,044,711	+		BPHYT_RS09035	0.26	+0.4
2,044,720	+		BPHYT_RS09035	0.27	+1.6
2,044,840	-		BPHYT_RS09035	0.34	-0.9
2,044,868	+		BPHYT_RS09035	0.36	+0.0
2,044,973	+		BPHYT_RS09035	0.43	+0.0
2,044,994	+		BPHYT_RS09035	0.44	+1.2
2,044,994	+		BPHYT_RS09035	0.44	-1.2
2,044,995	-		BPHYT_RS09035	0.44	-0.1
2,044,995	-		BPHYT_RS09035	0.44	-0.4
2,044,997	+		BPHYT_RS09035	0.44	-1.6
2,044,998	-		BPHYT_RS09035	0.44	-0.4
2,045,000	+		BPHYT_RS09035	0.45	-0.5
2,045,001	-		BPHYT_RS09035	0.45	+0.5
2,045,010	-		BPHYT_RS09035	0.45	-0.3
2,045,010	-		BPHYT_RS09035	0.45	-0.3
2,045,010	-		BPHYT_RS09035	0.45	-0.5
2,045,010	-		BPHYT_RS09035	0.45	+0.0
2,045,222	+		BPHYT_RS09035	0.59	-0.7
2,045,222	+		BPHYT_RS09035	0.59	-0.0
2,045,580	-		BPHYT_RS09035	0.82	-1.3
2,045,729	+				+0.5
2,045,730	-				-0.1
2,045,730	-				-0.8
2,045,730	-				-1.3
2,045,851	+				-0.2
2,046,014	-		BPHYT_RS09040	0.28	+0.1
2,046,275	-		BPHYT_RS09040	0.75	+2.8
2,046,275	-		BPHYT_RS09040	0.75	+2.3
2,046,329	-		BPHYT_RS09040	0.85	-0.3
2,046,329	-		BPHYT_RS09040	0.85	+0.1
2,046,411	-				+1.9
2,046,447	-				-1.8
2,046,598	-				-1.1
2,046,598	-				-0.0
2,046,618	-				+0.2
2,046,620	-				+0.9