Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08835

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
2,000,997	+		BPHYT_RS08830	0.18	+1.7
2,001,121	-		BPHYT_RS08830	0.34	+0.4
2,001,121	-		BPHYT_RS08830	0.34	-0.3
2,001,121	-		BPHYT_RS08830	0.34	-0.9
2,001,130	-		BPHYT_RS08830	0.35	+1.1
2,001,217	-		BPHYT_RS08830	0.45	+0.1
2,001,217	-		BPHYT_RS08830	0.45	+0.1
2,001,541	-		BPHYT_RS08830	0.85	-0.3
2,002,147	+		BPHYT_RS08835	0.21	+0.2
2,002,147	+		BPHYT_RS08835	0.21	+1.6
2,002,378	+		BPHYT_RS08835	0.34	-0.2
2,002,378	+		BPHYT_RS08835	0.34	-0.0
2,002,379	-		BPHYT_RS08835	0.34	+1.0
2,002,688	+		BPHYT_RS08835	0.52	+0.6
2,002,689	-		BPHYT_RS08835	0.52	+0.5
2,002,941	-		BPHYT_RS08835	0.66	+0.6
2,002,994	-		BPHYT_RS08835	0.69	+0.0
2,003,011	+		BPHYT_RS08835	0.70	+1.8
2,003,215	+		BPHYT_RS08835	0.81	-0.2
2,003,256	-		BPHYT_RS08835	0.84	-1.7
2,003,256	-		BPHYT_RS08835	0.84	-0.3
2,003,281	+		BPHYT_RS08835	0.85	+0.2
2,003,282	-		BPHYT_RS08835	0.85	+1.0
2,003,282	-		BPHYT_RS08835	0.85	+0.9
2,003,282	-		BPHYT_RS08835	0.85	+0.5
2,003,327	+		BPHYT_RS08835	0.88	-0.7
2,003,363	-		BPHYT_RS08835	0.90	+0.5
2,003,363	-		BPHYT_RS08835	0.90	+0.4
2,003,579	-				-0.6
2,003,808	+				+0.1
2,003,808	+				+0.2
2,004,360	+		BPHYT_RS08840	0.56	-0.9
2,004,456	+		BPHYT_RS08840	0.66	+0.0
2,004,457	-		BPHYT_RS08840	0.66	-0.4