Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08715
Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X |
---|---|---|---|---|---|
remove | |||||
1,978,153 | - | BPHYT_RS08710 | 0.41 | -0.8 | |
1,978,468 | - | BPHYT_RS08710 | 0.61 | -0.4 | |
1,978,566 | + | BPHYT_RS08710 | 0.67 | +0.0 | |
1,978,567 | - | BPHYT_RS08710 | 0.67 | -0.2 | |
1,978,701 | + | BPHYT_RS08710 | 0.76 | +0.3 | |
1,978,701 | + | BPHYT_RS08710 | 0.76 | -2.6 | |
1,978,702 | - | BPHYT_RS08710 | 0.76 | -0.8 | |
1,978,725 | + | BPHYT_RS08710 | 0.77 | +0.1 | |
1,978,728 | + | BPHYT_RS08710 | 0.77 | -0.3 | |
1,978,737 | + | BPHYT_RS08710 | 0.78 | +0.6 | |
1,978,801 | - | BPHYT_RS08710 | 0.82 | -2.0 | |
1,978,947 | + | -0.2 | |||
1,978,948 | - | +1.1 | |||
1,979,422 | - | BPHYT_RS08715 | 0.63 | -3.8 | |
1,979,457 | - | BPHYT_RS08715 | 0.69 | +0.6 | |
1,980,020 | - | BPHYT_RS08720 | 0.39 | +0.3 | |
1,980,239 | + | BPHYT_RS08720 | 0.74 | -1.0 | |
1,980,239 | + | BPHYT_RS08720 | 0.74 | +0.1 | |
1,980,239 | + | BPHYT_RS08720 | 0.74 | -0.8 | |
1,980,240 | - | BPHYT_RS08720 | 0.74 | -0.5 | |
1,980,240 | - | BPHYT_RS08720 | 0.74 | +1.6 | |
1,980,240 | - | BPHYT_RS08720 | 0.74 | +0.2 | |
1,980,366 | - | +1.3 |
Or see this region's nucleotide sequence