Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08715

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
1,978,153	-		BPHYT_RS08710	0.41	-0.8
1,978,468	-		BPHYT_RS08710	0.61	-0.4
1,978,566	+		BPHYT_RS08710	0.67	+0.0
1,978,567	-		BPHYT_RS08710	0.67	-0.2
1,978,701	+		BPHYT_RS08710	0.76	+0.3
1,978,701	+		BPHYT_RS08710	0.76	-2.6
1,978,702	-		BPHYT_RS08710	0.76	-0.8
1,978,725	+		BPHYT_RS08710	0.77	+0.1
1,978,728	+		BPHYT_RS08710	0.77	-0.3
1,978,737	+		BPHYT_RS08710	0.78	+0.6
1,978,801	-		BPHYT_RS08710	0.82	-2.0
1,978,947	+				-0.2
1,978,948	-				+1.1
1,979,422	-		BPHYT_RS08715	0.63	-3.8
1,979,457	-		BPHYT_RS08715	0.69	+0.6
1,980,020	-		BPHYT_RS08720	0.39	+0.3
1,980,239	+		BPHYT_RS08720	0.74	-1.0
1,980,239	+		BPHYT_RS08720	0.74	+0.1
1,980,239	+		BPHYT_RS08720	0.74	-0.8
1,980,240	-		BPHYT_RS08720	0.74	-0.5
1,980,240	-		BPHYT_RS08720	0.74	+1.6
1,980,240	-		BPHYT_RS08720	0.74	+0.2
1,980,366	-				+1.3