Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07800

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07795 and BPHYT_RS07800 are separated by 525 nucleotidesBPHYT_RS07800 and BPHYT_RS07805 overlap by 4 nucleotidesBPHYT_RS07805 and BPHYT_RS07810 are separated by 133 nucleotides BPHYT_RS07795: BPHYT_RS07795 - IclR family transcriptional regulator, at 1,779,428 to 1,780,264 _RS07795 BPHYT_RS07800: BPHYT_RS07800 - transposase, at 1,780,790 to 1,781,092 _RS07800 BPHYT_RS07805: BPHYT_RS07805 - transposase, at 1,781,089 to 1,781,925 _RS07805 BPHYT_RS07810: BPHYT_RS07810 - transposase, at 1,782,059 to 1,782,283 _RS07810 Position (kb) 1780 1781 1782Strain fitness (log2 ratio) -1 0 1at 1780.264 kb on + strandat 1780.264 kb on + strandat 1780.264 kb on + strandat 1780.265 kb on - strandat 1780.588 kb on + strandat 1780.588 kb on + strandat 1780.588 kb on + strandat 1780.588 kb on + strandat 1782.011 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
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1,780,264 + -1.6
1,780,264 + +0.6
1,780,264 + -0.2
1,780,265 - -1.1
1,780,588 + +0.2
1,780,588 + -0.0
1,780,588 + +0.3
1,780,588 + +0.0
1,782,011 - -0.1

Or see this region's nucleotide sequence