Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06900

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
1,561,442	+		BPHYT_RS06895	0.41	+0.3
1,561,442	+		BPHYT_RS06895	0.41	+0.7
1,561,443	-		BPHYT_RS06895	0.41	-1.1
1,561,443	-		BPHYT_RS06895	0.41	+0.1
1,561,445	+		BPHYT_RS06895	0.41	-1.0
1,561,579	+		BPHYT_RS06895	0.52	+0.6
1,561,580	-		BPHYT_RS06895	0.52	+0.7
1,561,580	-		BPHYT_RS06895	0.52	-0.5
1,561,580	-		BPHYT_RS06895	0.52	-0.2
1,561,658	+		BPHYT_RS06895	0.58	-0.1
1,561,658	+		BPHYT_RS06895	0.58	-0.3
1,561,661	+		BPHYT_RS06895	0.59	+1.4
1,561,661	+		BPHYT_RS06895	0.59	+2.9
1,561,697	+		BPHYT_RS06895	0.62	+0.4
1,561,697	+		BPHYT_RS06895	0.62	-0.5
1,561,698	-		BPHYT_RS06895	0.62	+0.8
1,561,698	-		BPHYT_RS06895	0.62	+0.1
1,561,991	+		BPHYT_RS06895	0.85	+1.3
1,561,991	+		BPHYT_RS06895	0.85	-0.7
1,561,991	+		BPHYT_RS06895	0.85	-1.3
1,561,992	-		BPHYT_RS06895	0.85	+1.7
1,562,006	+		BPHYT_RS06895	0.86	-1.3
1,562,019	-		BPHYT_RS06895	0.87	-0.0
1,562,266	+				+0.0
1,562,266	+				+1.2
1,562,266	+				+0.5
1,562,267	-				+0.4
1,562,400	+				-0.2
1,562,401	-				-0.1
1,562,401	-				-0.6
1,562,405	+				+0.1
1,562,405	+				-2.2
1,562,405	+				+0.2
1,562,406	-				-0.3
1,562,406	-				+0.0
1,562,495	+				-0.9
1,562,496	-				-0.5
1,562,496	-				-0.6
1,563,052	-		BPHYT_RS06900	0.54	-0.7
1,563,093	-		BPHYT_RS06900	0.57	-1.0
1,563,093	-		BPHYT_RS06900	0.57	+0.8
1,563,093	-		BPHYT_RS06900	0.57	-0.2
1,563,093	-		BPHYT_RS06900	0.57	-1.2
1,563,093	-		BPHYT_RS06900	0.57	-4.1
1,563,093	-		BPHYT_RS06900	0.57	-3.9
1,563,149	+		BPHYT_RS06900	0.62	-0.6
1,563,378	-		BPHYT_RS06900	0.81	-1.9
1,563,378	-		BPHYT_RS06900	0.81	-0.2
1,564,020	+				-0.3
1,564,025	+				+0.5
1,564,026	-				+2.4
1,564,026	-				-0.3
1,564,144	-				+1.0
1,564,144	-				+0.4
1,564,145	+				+0.5
1,564,277	-		BPHYT_RS06905	0.10	-2.7
1,564,386	-		BPHYT_RS06905	0.16	+0.2
1,564,398	-		BPHYT_RS06905	0.16	-0.1
1,564,424	+		BPHYT_RS06905	0.17	-1.5
1,564,425	-		BPHYT_RS06905	0.17	+1.2
1,564,559	+		BPHYT_RS06905	0.24	-1.1