Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06805

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
1,537,604	+		BPHYT_RS06800	0.28	+1.2
1,537,604	+		BPHYT_RS06800	0.28	+0.4
1,537,651	+		BPHYT_RS06800	0.33	-1.4
1,537,651	+		BPHYT_RS06800	0.33	-0.6
1,537,652	-		BPHYT_RS06800	0.33	+0.0
1,537,729	-		BPHYT_RS06800	0.42	+0.3
1,537,769	-		BPHYT_RS06800	0.47	+0.3
1,537,769	-		BPHYT_RS06800	0.47	-0.7
1,537,769	-		BPHYT_RS06800	0.47	-0.1
1,537,769	-		BPHYT_RS06800	0.47	-0.4
1,537,769	-		BPHYT_RS06800	0.47	+0.4
1,537,873	+		BPHYT_RS06800	0.58	-0.3
1,537,877	+		BPHYT_RS06800	0.59	+0.5
1,537,878	-		BPHYT_RS06800	0.59	-0.8
1,537,878	-		BPHYT_RS06800	0.59	-1.5
1,538,031	-				-1.3
1,538,224	+				-3.0
1,538,327	+				-0.3
1,538,327	+				-0.8
1,538,327	+				-0.3
1,538,327	+				-0.0
1,538,328	-				-2.5
1,538,328	-				+0.5
1,538,373	-				-0.3
1,538,386	+				+0.0
1,538,387	-				+0.2
1,538,433	+				+0.8
1,538,550	-				+0.1
1,538,550	-				+0.7
1,538,550	-				+0.1
1,538,550	-				-1.1
1,538,558	-				+0.5
1,538,576	+				+0.1
1,538,577	-				+0.2
1,538,577	-				-0.1
1,538,723	+		BPHYT_RS06805	0.21	-0.5
1,538,723	+		BPHYT_RS06805	0.21	-2.6
1,538,723	+		BPHYT_RS06805	0.21	+1.0
1,538,724	-		BPHYT_RS06805	0.21	+0.9
1,538,724	-		BPHYT_RS06805	0.21	-0.2
1,538,868	-		BPHYT_RS06805	0.33	+1.4
1,538,930	+		BPHYT_RS06805	0.38	+0.1
1,538,933	+		BPHYT_RS06805	0.38	-2.8
1,538,934	-		BPHYT_RS06805	0.38	+0.6
1,538,934	-		BPHYT_RS06805	0.38	-0.2
1,539,254	+		BPHYT_RS06805	0.64	-1.0
1,539,255	-		BPHYT_RS06805	0.64	+1.3
1,539,255	-		BPHYT_RS06805	0.64	+0.2
1,539,366	-		BPHYT_RS06805	0.73	+0.3
1,539,366	-		BPHYT_RS06805	0.73	-0.5
1,539,528	+		BPHYT_RS06805	0.87	+1.2
1,539,528	+		BPHYT_RS06805	0.87	+0.3
1,539,529	-		BPHYT_RS06805	0.87	+0.5
1,539,529	-		BPHYT_RS06805	0.87	+0.9
1,539,717	+				+0.7
1,539,717	+				-1.0
1,539,718	-				+0.7
1,539,719	+				+0.9
1,539,719	+				-0.7
1,539,720	-				-0.9
1,539,720	-				+0.3
1,539,720	-				-0.4
1,539,720	-				-0.2
1,539,773	+				+1.6
1,539,829	+				-0.5
1,539,849	+				+0.3
1,539,849	+				+0.0
1,539,849	+				+1.5
1,539,849	+				-0.6
1,539,849	+				-0.5
1,539,849	+				-1.0
1,539,850	-				+0.2
1,539,850	-				-0.3
1,539,850	-				-0.9
1,539,850	-				-0.5
1,539,850	-				-0.7
1,539,851	+				-2.9
1,539,852	-				+0.5
1,539,880	+				+0.8
1,539,880	+				-0.9
1,539,880	+				+0.2
1,539,881	-				+0.9
1,539,881	-				-1.2
1,539,882	+				+0.1
1,539,883	-				+2.5
1,539,914	+				+0.1
1,539,915	-				-0.1
1,539,915	-				-0.7
1,540,008	+				+0.3
1,540,008	+				+0.5
1,540,008	+				+0.7
1,540,081	+		BPHYT_RS06810	0.11	+0.1
1,540,081	+		BPHYT_RS06810	0.11	+0.6
1,540,082	-		BPHYT_RS06810	0.11	-1.2
1,540,083	+		BPHYT_RS06810	0.11	-0.4
1,540,083	+		BPHYT_RS06810	0.11	-0.2
1,540,084	-		BPHYT_RS06810	0.12	-0.3
1,540,084	-		BPHYT_RS06810	0.12	-2.0
1,540,084	-		BPHYT_RS06810	0.12	-0.4
1,540,084	-		BPHYT_RS06810	0.12	+0.1
1,540,084	-		BPHYT_RS06810	0.12	+1.0
1,540,315	-		BPHYT_RS06810	0.32	+0.1
1,540,341	+		BPHYT_RS06810	0.34	-0.0
1,540,347	+		BPHYT_RS06810	0.35	+0.4
1,540,348	-		BPHYT_RS06810	0.35	-0.2
1,540,378	-		BPHYT_RS06810	0.38	+2.1
1,540,428	+		BPHYT_RS06810	0.42	+0.1
1,540,481	-		BPHYT_RS06810	0.47	+0.1
1,540,530	+		BPHYT_RS06810	0.51	+0.3
1,540,552	+		BPHYT_RS06810	0.53	+0.4
1,540,573	-		BPHYT_RS06810	0.55	-1.2