Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06485 and BPHYT_RS06490 overlap by 8 nucleotides BPHYT_RS06490 and BPHYT_RS06495 are separated by 164 nucleotides BPHYT_RS06495 and BPHYT_RS06500 are separated by 32 nucleotides BPHYT_RS06500 and BPHYT_RS06505 are separated by 2 nucleotides
BPHYT_RS06485: BPHYT_RS06485 - globin, at 1,476,207 to 1,476,620
_RS06485
BPHYT_RS06490: BPHYT_RS06490 - membrane protein, at 1,476,613 to 1,477,242
_RS06490
BPHYT_RS06495: BPHYT_RS06495 - glucose-1-dehydrogenase, at 1,477,407 to 1,478,153
_RS06495
BPHYT_RS06500: BPHYT_RS06500 - LOG family protein, at 1,478,186 to 1,478,770
_RS06500
BPHYT_RS06505: BPHYT_RS06505 - TetR family transcriptional regulator, at 1,478,773 to 1,479,498
_RS06505
Position (kb) 1477
1478
1479 Strain fitness (log2 ratio) -2
-1
0
1 at 1476.426 kb on + strand, within BPHYT_RS06485 at 1476.653 kb on - strand at 1476.906 kb on + strand, within BPHYT_RS06490 at 1476.907 kb on - strand, within BPHYT_RS06490 at 1477.015 kb on + strand, within BPHYT_RS06490 at 1477.015 kb on + strand, within BPHYT_RS06490 at 1477.082 kb on + strand, within BPHYT_RS06490 at 1477.108 kb on + strand, within BPHYT_RS06490 at 1477.261 kb on + strand at 1477.261 kb on + strand at 1477.408 kb on + strand at 1477.408 kb on + strand at 1477.447 kb on + strand at 1477.473 kb on + strand at 1477.473 kb on + strand at 1477.474 kb on - strand at 1477.474 kb on - strand at 1477.474 kb on - strand at 1477.658 kb on + strand, within BPHYT_RS06495 at 1477.693 kb on + strand, within BPHYT_RS06495 at 1477.693 kb on + strand, within BPHYT_RS06495 at 1477.804 kb on + strand, within BPHYT_RS06495 at 1477.805 kb on - strand, within BPHYT_RS06495 at 1478.356 kb on - strand, within BPHYT_RS06500 at 1478.369 kb on - strand, within BPHYT_RS06500 at 1478.718 kb on + strand at 1478.719 kb on - strand at 1478.751 kb on + strand at 1478.752 kb on - strand at 1478.831 kb on + strand at 1478.999 kb on + strand, within BPHYT_RS06505 at 1479.011 kb on + strand, within BPHYT_RS06505 at 1479.012 kb on - strand, within BPHYT_RS06505 at 1479.044 kb on - strand, within BPHYT_RS06505
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 1,476,426 + BPHYT_RS06485 0.53 -0.6 1,476,653 - +0.4 1,476,906 + BPHYT_RS06490 0.47 -1.2 1,476,907 - BPHYT_RS06490 0.47 +1.0 1,477,015 + BPHYT_RS06490 0.64 +0.2 1,477,015 + BPHYT_RS06490 0.64 -0.0 1,477,082 + BPHYT_RS06490 0.74 -1.5 1,477,108 + BPHYT_RS06490 0.79 -0.9 1,477,261 + -0.0 1,477,261 + -1.1 1,477,408 + +0.1 1,477,408 + +0.0 1,477,447 + +0.1 1,477,473 + -1.9 1,477,473 + +0.4 1,477,474 - -0.2 1,477,474 - -0.1 1,477,474 - +0.3 1,477,658 + BPHYT_RS06495 0.34 -0.9 1,477,693 + BPHYT_RS06495 0.38 -0.1 1,477,693 + BPHYT_RS06495 0.38 -0.1 1,477,804 + BPHYT_RS06495 0.53 +0.0 1,477,805 - BPHYT_RS06495 0.53 -1.0 1,478,356 - BPHYT_RS06500 0.29 -2.2 1,478,369 - BPHYT_RS06500 0.31 -0.2 1,478,718 + -1.2 1,478,719 - -0.5 1,478,751 + +1.0 1,478,752 - +0.6 1,478,831 + -0.4 1,478,999 + BPHYT_RS06505 0.31 -1.1 1,479,011 + BPHYT_RS06505 0.33 +0.3 1,479,012 - BPHYT_RS06505 0.33 -0.4 1,479,044 - BPHYT_RS06505 0.37 +0.2
Or see this region's nucleotide sequence