Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06300

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS06295 and BPHYT_RS06300 are separated by 57 nucleotidesBPHYT_RS06300 and BPHYT_RS06305 are separated by 147 nucleotides BPHYT_RS06295: BPHYT_RS06295 - diguanylate phosphodiesterase, at 1,434,680 to 1,436,377 _RS06295 BPHYT_RS06300: BPHYT_RS06300 - hypothetical protein, at 1,436,435 to 1,436,650 _RS06300 BPHYT_RS06305: BPHYT_RS06305 - small mechanosensitive ion channel protein MscS, at 1,436,798 to 1,437,607 _RS06305 Position (kb) 1436 1437Strain fitness (log2 ratio) -1 0 1at 1435.664 kb on + strand, within BPHYT_RS06295at 1435.697 kb on - strand, within BPHYT_RS06295at 1436.091 kb on - strand, within BPHYT_RS06295at 1436.105 kb on + strand, within BPHYT_RS06295at 1436.509 kb on - strand, within BPHYT_RS06300at 1436.677 kb on + strandat 1436.772 kb on - strandat 1436.772 kb on - strandat 1436.873 kb on - strandat 1437.134 kb on - strand, within BPHYT_RS06305

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
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1,435,664 + BPHYT_RS06295 0.58 -0.2
1,435,697 - BPHYT_RS06295 0.60 -0.2
1,436,091 - BPHYT_RS06295 0.83 +0.9
1,436,105 + BPHYT_RS06295 0.84 +0.5
1,436,509 - BPHYT_RS06300 0.34 +0.5
1,436,677 + -1.5
1,436,772 - -0.2
1,436,772 - -0.1
1,436,873 - -0.1
1,437,134 - BPHYT_RS06305 0.41 -0.1

Or see this region's nucleotide sequence