Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05975

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
1,358,316	+				+0.5
1,358,320	+				-1.7
1,358,330	+				-0.4
1,358,718	+		BPHYT_RS05970	0.57	+1.0
1,358,850	+		BPHYT_RS05970	0.76	-0.8
1,358,851	-		BPHYT_RS05970	0.76	+0.3
1,358,881	+		BPHYT_RS05970	0.81	-0.1
1,358,947	-				+0.1
1,359,107	+				+0.2
1,359,201	+				-0.4
1,359,201	+				+0.1
1,359,202	-				-0.1
1,359,211	+				-1.8
1,359,211	+				+0.0
1,359,253	+				-0.4
1,359,277	+				+0.5
1,359,534	+		BPHYT_RS05975	0.16	-0.0
1,359,534	+		BPHYT_RS05975	0.16	-0.1
1,359,535	-		BPHYT_RS05975	0.16	+0.3
1,359,535	-		BPHYT_RS05975	0.16	-2.3
1,359,915	+		BPHYT_RS05975	0.43	+0.3
1,360,014	+		BPHYT_RS05975	0.49	-0.1
1,360,193	+		BPHYT_RS05975	0.62	-0.2
1,360,193	+		BPHYT_RS05975	0.62	-1.0
1,360,676	+				-1.7
1,361,682	+		BPHYT_RS05980	0.40	-0.7
1,361,730	-		BPHYT_RS05980	0.42	-1.2