Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04745

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
1,095,105	+				-1.5
1,095,106	-				-2.2
1,095,348	+		BPHYT_RS04740	0.25	-4.6
1,095,367	+		BPHYT_RS04740	0.27	-1.3
1,095,368	-		BPHYT_RS04740	0.27	-1.2
1,095,748	+		BPHYT_RS04740	0.67	-1.1
1,095,748	+		BPHYT_RS04740	0.67	-3.5
1,095,749	-		BPHYT_RS04740	0.67	-2.1
1,095,749	-		BPHYT_RS04740	0.67	-0.6
1,095,787	+		BPHYT_RS04740	0.71	-4.2
1,095,787	+		BPHYT_RS04740	0.71	-0.6
1,095,912	+		BPHYT_RS04740	0.84	-4.1
1,095,913	-		BPHYT_RS04740	0.84	-3.3
1,096,066	+				-4.3
1,096,193	+				-2.4
1,096,194	-				-1.1
1,096,256	-		BPHYT_RS04745	0.12	-1.5
1,096,403	+		BPHYT_RS04745	0.23	-2.8
1,096,593	-		BPHYT_RS04745	0.38	-1.5
1,096,628	+		BPHYT_RS04745	0.41	-1.1
1,096,862	+		BPHYT_RS04745	0.58	-3.8
1,097,221	+		BPHYT_RS04745	0.86	-1.7
1,097,221	+		BPHYT_RS04745	0.86	-1.9
1,097,222	-		BPHYT_RS04745	0.86	-0.5
1,097,408	+				-1.1
1,097,438	-				-0.1
1,097,488	+				-1.7
1,097,531	+				-4.0
1,097,531	+				-1.1
1,097,568	-		BPHYT_RS04750	0.12	-1.4
1,097,568	-		BPHYT_RS04750	0.12	+0.2
1,097,804	-		BPHYT_RS04750	0.43	-1.5