Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04415

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS04410 and BPHYT_RS04415 are separated by 186 nucleotidesBPHYT_RS04415 and BPHYT_RS04420 are separated by 20 nucleotides BPHYT_RS04410: BPHYT_RS04410 - heptose 1-phosphate adenyltransferase, at 1,018,512 to 1,019,468 _RS04410 BPHYT_RS04415: BPHYT_RS04415 - N-acylglucosamine 2-epimerase, at 1,019,655 to 1,020,788 _RS04415 BPHYT_RS04420: BPHYT_RS04420 - glycosyl transferase family 1, at 1,020,809 to 1,022,062 _RS04420 Position (kb) 1019 1020 1021Strain fitness (log2 ratio) -1 0 1at 1019.558 kb on + strandat 1019.559 kb on - strandat 1019.586 kb on + strandat 1020.220 kb on - strand, within BPHYT_RS04415at 1020.448 kb on + strand, within BPHYT_RS04415

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
remove
1,019,558 + +0.5
1,019,559 - -0.1
1,019,586 + -0.4
1,020,220 - BPHYT_RS04415 0.50 -0.3
1,020,448 + BPHYT_RS04415 0.70 -1.6

Or see this region's nucleotide sequence