Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03660 and BPHYT_RS03665 are separated by 233 nucleotides BPHYT_RS03665 and BPHYT_RS03670 are separated by 490 nucleotides
BPHYT_RS03660: BPHYT_RS03660 - mechanosensitive ion channel protein MscS, at 832,108 to 832,920
_RS03660
BPHYT_RS03665: BPHYT_RS03665 - hypothetical protein, at 833,154 to 833,519
_RS03665
BPHYT_RS03670: BPHYT_RS03670 - peptidase U34, at 834,010 to 835,467
_RS03670
Position (kb) 833
834 Strain fitness (log2 ratio) -2
-1
0
1
2 at 832.211 kb on + strand, within BPHYT_RS03660 at 832.416 kb on - strand, within BPHYT_RS03660 at 832.416 kb on - strand, within BPHYT_RS03660 at 832.416 kb on - strand, within BPHYT_RS03660 at 832.416 kb on - strand, within BPHYT_RS03660 at 832.426 kb on - strand, within BPHYT_RS03660 at 832.745 kb on + strand, within BPHYT_RS03660 at 832.974 kb on + strand at 833.040 kb on - strand at 833.324 kb on - strand, within BPHYT_RS03665 at 833.349 kb on + strand, within BPHYT_RS03665 at 833.350 kb on - strand, within BPHYT_RS03665 at 833.350 kb on - strand, within BPHYT_RS03665 at 833.405 kb on + strand, within BPHYT_RS03665 at 833.406 kb on - strand, within BPHYT_RS03665 at 833.519 kb on + strand at 833.519 kb on + strand at 833.520 kb on - strand at 833.520 kb on - strand at 833.624 kb on - strand at 833.757 kb on + strand at 833.758 kb on - strand at 833.775 kb on - strand at 833.812 kb on - strand at 833.812 kb on - strand at 834.008 kb on - strand at 834.012 kb on - strand at 834.135 kb on + strand at 834.177 kb on - strand, within BPHYT_RS03670 at 834.416 kb on + strand, within BPHYT_RS03670 at 834.417 kb on - strand, within BPHYT_RS03670 at 834.460 kb on + strand, within BPHYT_RS03670 at 834.460 kb on + strand, within BPHYT_RS03670 at 834.461 kb on - strand, within BPHYT_RS03670 at 834.477 kb on - strand, within BPHYT_RS03670 at 834.486 kb on - strand, within BPHYT_RS03670
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 832,211 + BPHYT_RS03660 0.13 -0.2 832,416 - BPHYT_RS03660 0.38 +1.1 832,416 - BPHYT_RS03660 0.38 +1.1 832,416 - BPHYT_RS03660 0.38 -1.8 832,416 - BPHYT_RS03660 0.38 +1.5 832,426 - BPHYT_RS03660 0.39 -2.3 832,745 + BPHYT_RS03660 0.78 -1.1 832,974 + -0.3 833,040 - +2.5 833,324 - BPHYT_RS03665 0.46 -0.1 833,349 + BPHYT_RS03665 0.53 -0.1 833,350 - BPHYT_RS03665 0.54 -1.1 833,350 - BPHYT_RS03665 0.54 +1.2 833,405 + BPHYT_RS03665 0.69 -0.2 833,406 - BPHYT_RS03665 0.69 +0.5 833,519 + -0.9 833,519 + -0.1 833,520 - -0.0 833,520 - -1.3 833,624 - -0.4 833,757 + -0.1 833,758 - +0.5 833,775 - +0.6 833,812 - +0.3 833,812 - -0.9 834,008 - +0.4 834,012 - -1.7 834,135 + +1.0 834,177 - BPHYT_RS03670 0.11 +1.2 834,416 + BPHYT_RS03670 0.28 +0.5 834,417 - BPHYT_RS03670 0.28 +0.1 834,460 + BPHYT_RS03670 0.31 -0.0 834,460 + BPHYT_RS03670 0.31 +1.1 834,461 - BPHYT_RS03670 0.31 +0.3 834,477 - BPHYT_RS03670 0.32 -0.2 834,486 - BPHYT_RS03670 0.33 +0.4
Or see this region's nucleotide sequence